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Paper | Original Paper

2018

*Tokuro Hata, Raphaëlle Delagrange, Tomonori Arakawa, Sanghyun Lee, Richard Deblock, Hélène Bouchiat, Kensuke Kobayashi, and *Meydi Ferrier,
Enhanced shot noise of multiple Andreev reflections in a carbon nanotube quantum dot in SU(2) and SU(4) Kondo regimes,
Physical Review Letters, in press.

*Hiroshi Orihara, Yuko Harada, Fumiaki Kobayashi, Yuji Sasaki, Shuji Fujii, Yuki Satou, Yoshitomo Goto, and *Tomoyuki Nagaya,
Negative viscosity of a liquid crystal in the presence of turbulence,
Physical Review E, in press.

*Taro P. Shimizu and Kazumasa A. Takeuchi,
Measuring Lyapunov exponents of large chaotic systems with global coupling by time series analysis,
Chaos 28, 121103/1-6 (2018).

*Yuliang Jin, Pierfrancesco Urbani, Francesco Zamponi, *Hajime Yoshino,
A stability-reversibility map unifies elasticity, plasticity, yielding and jamming in hard sphere glasses,
Science Advances 4, eaat6387 (2018).

*Akito Noiri, Takashi Nakajima, Jun Yoneda, Matthieu R. Delbecq, Peter Stano, Tomohiro Otsuka, Kenta Takeda, Shinichi Amaha, Giles Allison, Kento Kawasaki, Arne Ludwig, Andreas D. Wieck, and Seigo Tarucha,
A fast quantum interface between different spin qubit encodings,
Nature Communications 9, 5066/1-7 (2018).

Misaki Ozawa, Atsushi Ikeda, Kunimasa Miyazaki, and *Walter Kob,
Ideal Glass States Are Not Purely Vibrational: Insight from Randomly Pinned Glasses,
Physical Review Letters 121, 205501 (2018).

*Kenta Takeda, Jun Yoneda, Tomohiro Otsuka, Takashi Nakajima, Matthieu R. Delbecq, Giles Allison, Yusuke Hoshi, Noritaka Usami, Kohei M. Itoh, Shunri Oda, Tetsuo Kodera, and Seigo Tarucha,
Optimized electrical control of a Si/SiGe spin qubit in the presence of an induced frequency shift,
npj Quantum Information 4, 54/1-6 (2018).

*Takanobu A. Katoh, Koji Ikegami, *Nariya Uchida, Toshihito Iwase, Daisuke Nakane, Tomoko Masaike, Mitsutoshi Setou, *Takayuki Nishizaka,
Three-dimensional tracking of microbeads attached to the tip of single isolated tracheal cilia beating under external load,
Scientific Reports 8, 15562 (2018).

Takashi Nishio, Yuko Yoshikawa, Wakao Fukuda, Naoki Umezawa, Tsunehiko Higuchi, Shinsuke Fujiwara, Tadayuki Imanaka and *Kenichi Yoshikawa,
Branched-Chain Polyamine Found in Hyperthermophiles Induces Unique Temperature-Dependent Structural Changes in Genome-Size DNA,
ChemPhysChem 19, 2299-2304 (2018).

Hiroki Sakuta, Shunsuke Seo, Shuto Kimura, Marcel Hörning, Koichiro Sadakane, Takahiro Kenmotsu, Motomu Tanaka and *Kenichi Yoshikawa,
Optical Fluid Pump: Generation of Directional Flow via Microphase Segregation/Homogenization,
The Journal of Physical Chemistry Letters 9, 5792-5796 (2018).

*Takumi Ito, Tomohiro Otsuka, Takashi Nakajima, Matthieu R. Delbecq, Shinichi Amaha, Jun Yoneda, Kenta Takeda, Akito Noiri, Giles Allison, Arne Ludwig, Andreas D. Wieck, and Seigo Tarucha,
Four single-spin Rabi oscillations in a quadruple quantum dot,
Applied Physics Letters 113, 093102/1-5 (2018).

Maryam Eshrati, Federico Amadei, Tom Van de Wiele, Mariam Veschgini, *Stefan Kaufmann, *Motomu Tanaka,
Biopolymer-based minimal formulations boost viability and metabolic functionality of probiotics lactobacillus rhamnosus GG through gastrointestinal passage,
Langmuir 34, 11167-11175 (2018).

Wasim Abuillan, Alexandra S. Becker, Bruno Deme, Tatsuya Homma , Hiroyuki Isobe, *Koji Harano, *Eiichi Nakamura, *Motomu Tanaka,
Neutron scattering reveals water confined in a watertight bilayer vesicle,
J. Am. Chem. Soc. 140, 11261-11266 (2018).

Keisuke Danno, Takuto Nakamura, Natsumi Okoso, Naohiko Nakamura, Kohta Iguchi, Yoshiaki Iwadate, Takahiro Kenmotsu, Masaya Ikegawa, Shinji Uemoto and *Kenichi Yoshikawa,
Cracking pattern of tissue slices induced by external extension provides useful diagnostic information,
Scientific Reports 8, 12167/1-6 (2018).

Yukinori Nishigami, Takuya Ohmura, Atsushi Taniguchi, Shigenori Nonaka, Junichi Manabe, Takuji Ishikawa, Masatoshi Ichikawa,,
Influence of cellular shape on sliding behavior of ciliates,
Communicative & Integrative Biology 11, e1506666 (2018).

Kunimasa Miyazaki, Yohei Nakayama, Hiromichi Matsuyama,
Entropy anomaly and linear irreversible thermodynamics,
Physical Review E 98, 022101 (2018).

Jose M. Carnerero, Shinsuke Masuoka, Hikari Baba, Yuko Yoshikawa, Rafael Prado-Gotor and *Kenichi Yoshikawa,
Decorating a Single Giant DNA with Gold Nanoparticles,
RSC Advances 8, 26571-26579 (2018).

*Takao Ohta, Cornelia Monzel, Alexandra S.Becker, Anthony D.Ho, *Motomu Tanaka,
Simple physical model unravels influences of chemokine on shape deformation and migration of human hematopoietic stem cells,
Scientific Reports 8, 10630 (2018).

Naoki Nakatani, Hiroki Sakuta, Masahito Hayashi, Shunsuke Tanaka, Kingo Takiguchi, Kanta Tsumoto and *Kenichi Yoshikawa,
Specific Spatial Localization of Actin and DNA in a Water/Water Microdroplet: Self‐Emergence of a Cell‐Like Structure,
ChemBioChem 19, 1370-1374 (2018).

Keita Saito, Shogo Ookubo, and Yasuyuki Kimura*,
Change in collective motion of colloidal particles driven by an optical vortex with driving force and spatial confinement,
Soft Matter 14, 6037-6042 (2018).

Armando Maestro, Nicolas Bruot, Jurij Kotar, Nariya Uchida, Ramin Golestanian, *Pietro Cicuta,
Control of synchronization in models of hydrodynamically coupled motile cilia,
Communications Physics 1, 28/1-8 (2018).

*Hajime Yoshino,
Disorder-free spin glass transitions and jamming in exactly solvable mean-field models,
SciPost Physics 4, 40 (2018).

Zeying Che, Jan de Gier, Iori Hiki, *Tomohiro Sasamoto,
Exact confirmation of 1D nonlinear fluctuating hydrodynamics for a two-species exclusion process,
Physical Review Letters 120, 240601 (2018).

Mariko Suga, Saori Suda, Masatoshi Ichikawa, and *Yasuyuki Kimura,
Self-propelled motion switching in nematic liquid crystal droplets in aqueous surfactant solutions,
Physical Review E 97, 062703/1-8 (2018).

*Natsuhiko Yoshinaga and Tanniemola B. Liverpool,
From hydrodynamic lubrication to many-body interactions in dense suspensions of active swimmers,
European Physical Journal E 41, 76 (2018).

*Takashi Nakajima, Matthieu R. Delbecq, Tomohiro Otsuka, Shinichi Amaha, Jun Yoneda, Akito Noiri, Kenta Takeda, Giles Allison, Arne Ludwig, Andreas D. Wieck, and Seigo Tarucha,
Coherent transfer of electron spin correlations assisted by dephasing noise,
Nature Communications 9, 2133/1-8 (2018).

Jim Gao, *Wei Guo, Satoshi Yui, Makoto Tsubota, and W. F. Vinen,
Dissipation in quantum turbulence in superfluid 4He above 1 K,
Physical Review B 97, 184518/1-10 (2018).

*Shota Norimoto, Shuji Nakamura, Yuma Okazaki, Tomonori Arakawa, Kenichi Asano, Koji Onomitsu, Kensuke Kobayashi, and Nobu-hisa Kaneko,,
Fano effect in the transport of an artificial molecule,
Physical Review B 97, 195313/1-8 (2018).

Yui Ota, Yuto Hosaka, Kento Yasuda, and *Shigeyuki Komura,
Three-disk microswimmer in a supported fluid membrane,
Physical Review E 97, 052612/1-7 (2018).

Toru Yoshizawa, Eiki Iyoda, and Takahiro Sagawa,,
Numerical Large Deviation Analysis of the Eigenstate Thermalization Hypothesis,
Physical Review Letters 120, 200604/1-6 (2018).

Takikawa Yoshinori, Yasuta Muneharu, Fujii Shuji, Orihara Hiroshi, Tanaka Yoshimi, and Nishinari Katsuyoshi,
Anomalous diffusion of particles dispersed in xanthan solutions subjected to shear flow,
Journal of the Physical Society of Japan 87, 054005/1-4 (2018).

Kota Mitsumoto and *Hajime Yoshino,
Orientational ordering of closely packed Janus particles,
Soft Matter 14, 3919-3928 (2018).

Kento Yasuda, Ryuichi Okamoto, Shigeyuki Komura, and Jean-Baptiste Fournier,
Dynamics of a bilayer membrane with membrane-solvent partial slip boundary conditions,
Soft Materials 16(3), 186-191 (2018).

Chika Okimura, Yuichi Sakumura, Katsuya Shimabukuro, and *Yoshiaki Iwadate,
Sensing of substratum rigidity and directional migration by fast-crawling cells,
Physical Review E 97, 052401 (2018).

*Takahisa Fukadai and Tomohiro Sasamoto,
Transient Dynamics of Double Quantum Dots Coupled to Two Reservoirs,
Journal of the Physical Society of Japan 87, 054006/1-22 (2018).

*Hailong Peng, Momoji Kubo, and *Hayato Shiba,
Molecular dynamics study of mesophase transitions upon annealing of imidazolium-based ionic liquids with long-alkyl chains,
Physical Chemistry Chemical Physics 20, 9796-9805 (2018).

Hayato Kikuchi, Keiji Nose, Yuko Yoshikawa and *Kenichi Yoshikawa,
Double-strand breaks in genome-sized DNA caused by mechanical stress under mixing: Quantitative evaluation through single-molecule observation,
Chemical Physics Letters 701, 81-85 (2018).

Eiki Iyoda and Takahiro Sagawa,,
Scrambling of quantum information in quantum many-body systems,
Physical Review A 97, 042330/1-9 (2018).

Yasufumi Ito and *Kazumasa A. Takeuchi,
When fast and slow interfaces grow together: connection to the half-space problem of the Kardar-Parisi-Zhang class,
Physical Review E 97, 040103(R)/1-6 (2018).

*Satoshi Yui, Makoto Tsubota, and Hiromichi Kobayashi,
Three-Dimensional Coupled Dynamics of the two-fluid model in superfluid 4He: Deformed velocity profile of normal fluid in thermal counterflow,
Physical Review Letters 120, 155301/1-4 (2018).

*Yuta Asano, Hiroshi Watanabe, and Hiroshi Noguchi,
Polymer effects on Karman vortex: Molecular dynamics study,
The Journal of Chemical Physics 148, 144901 (2018).

Chiho Watanabe and *Miho Yanagisawa,
Cell-size Confinement effect on Protein Diffusion in Crowding Poly(ethylene)glycol solution,
Physical Chemistry Chemical Physics 20, 8842-8847 (2018).

T. V. Sachin Krishnan, Kento Yasuda, Ryuichi Okamoto, and Shigeyuki Komura,
Thermal and active fluctuations of a compressible bilayer vesicle,
J. Phys.: Condens. Matter 30, 175101/1-9 (2018).

Takumi Matsumoto and Takahiro Sagawa,,
Role of sufficient statistics in stochastic thermodynamics and its implication to sensory adaptation,
Physical Review E 97, 042103/1-11 (2018).

*Hiroyuki Kitahata, Natsuhiko Yoshinaga,
Effective diffusion coefficient including the Marangoni effect,
Journal of Chemical Physics 148, 134906/1-8 (2018).

*Hiroyuki Kitahata and Natsuhiko Yoshinaga,
Effective diffusion coefficient including the Marangoni effect,
Journal of Chemical Physics 148, 134906 (2018).

Kyongwan Kim, Natsuhiko Yoshinaga, Sanjib Bhattacharyya, Hikaru Nakazawa, Mitsuo Umetsu, and *Winfried Teizer,
Large-scale chirality in an active layer of microtubules and kinesin motor proteins,
Soft Matter 14, 3221-3231 (2018).

Masaki Mizutani, Isil Tulum, Yoshiaki Kinosita, Takayuki Nishizaka, Makoto Miyata,
Detailed Analyses of Stall Force Generation in Mycoplasma mobile Gliding,
Biophysical Journal 114, 1411-1419 (2018).

Takuya Ohmura, Yukinori Nishigami, Atsushi Taniguchi, Shigenori Nonaka, Junichi Manabe, Takuji Ishikawa, and Masatoshi Ichikawa,
Simple mechanosense and response of cilia motion reveal the intrinsic habits of ciliates,
Proceedings of the National Academy of Sciences 115, 3231-3236 (2018).

Tatsuaki Tsuruyama,
Information Thermodynamics of the Cell Signal Transduction as a Szilard Engine,
Entropy 20, 224 (2018).

Atsushi Sakai, Yoshihiro Murayama, Kei Fujiwara , Takahiro Fujisawa, Saori Sasaki, Satoru Kidoaki, and *Miho Yanagisawa,
Increasing Elasticity through Changes in the Secondary Structure of Gelatin by Gelation in a Microsized Lipid Space,
ACS Central Science 4(4), 477-483 (2018).

Atsushi Sakai, Yoshihiro Murayama, Kei Fujiwara , Takahiro Fujisawa, Saori Sasaki, Satoru Kidoaki, and *Miho Yanagisawa,
Increasing Elasticity through Changes in the Secondary Structure of Gelatin by Gelation in a Microsized Lipid Space,
ACS Central Science 4(4), 477-483 (2018).

Keigo Nakamura, Tetsuya Hisanaga, Koichi Fujimoto, Keiji Nakajima and *Hirofumi Wada,
Plant-inspired pipettes,
Journal of the Royal Society Interface 15, 20170868 (2018).

Takumi Furusato, Fumihiro Horie, Hideaki T. Matsubayashi, Kazuaki Amikura, Yutetsu Kuruma, and *Takuya Ueda,
De novo synthesis of basal bacterial cell division proteins FtsZ, FtsA, and ZipA inside giant vesicles,
ACS Synthetic Biology 7(4), 953–961 (2018).

Kay Brandner, Taro Hanazato, *Keiji Saito,
Thermodynamic Bounds on Precision in Ballistic Multi-Terminal Transport,
Physical Review Letters 120, 090601/1-5 (2018).

Ai Kanemura, Yuko Yoshikawa, Wakao Fukuda, Kanta Tsumoto, Takahiro Kenmotsu and *Kenichi Yoshikawa,
Opposite effect of polyamines on In vitro gene expression: Enhancement at low concentrations but inhibition at high concentrations,
PLOS ONE 13, 1-11 (2018).

Swaminath Bharadwaj, P. B. Sunil Kumar, Shigeyuki Komura, and Abhijit P. Deshpande,
Kosmotropic effect leads to LCST decrease in thermoresponsive polymer solutions,
Journal of Chemical Physics 148, 084903 (2018).

*Tatsuaki Tsuruyama,
Information Thermodynamics Derives the EntropyCurrent of Cell Signal Transduction as a Model of aBinary Coding System,
Entropy 20, 145 (2018).

*Naohito Urakami, Takehiro Jimbo, Yuka Sakuma and Masayuki Imai,
Molecular mechanism of vesicle division induced by coupling between lipid geometry and membrane curvatures,
Soft Matter 14, 3018-3027 (2018).

Kui-Tian Xi, Tim Byrnes, and Hiroki Saito,
Fingering instabilities and pattern formation in a two-component dipolar Bose-Einstein condensate,
Physical Review A 97, 023625/1-9 (2018).

Naoki Irikura, Yujiro Eto, Takuya Hirano, and *Hiroki Saito,
Ground-state phases of a mixture of spin-1 and spin-2 Bose-Einstein condensates,
Physical Review A 97, 023622/1-10 (2018).

Yujiro Eto, Hitoshi Shibayama, Hiroki Saito, and Takuya Hirano,
Spinor dynamics in a mixture of spin-1 and spin-2 Bose-Einstein condensates,
Physical Review A 97, 021602(R)/1-5 (2018).

*Hayato Shiba, Peter Keim, and Takeshi Kawasaki,
Isolating long-wavelength fluctuation from structural relaxation in two-dimensional glass: cage-relative displacement,
Journal of Physics: Condensed Matter 30, 094004/1-9 (2018).

Hiroki Taniguchi, Shota Suzuki, Tomonori Arakawa, Hiroyuki Yoshida, *Yasuhiro Niimi, and Kensuke Kobayashi,
Fabrication of thin films of two-dimensional triangular antiferromagnet Ag2CrO2 and their transport properties,
AIP Advances 8, 025010/1-6 (2018).

Yugo Harada, Keisuke Koyoshi, Hiroki Sakuta, Koichiro Sadakane,Takahiro Kenmotsu, and *Kenichi Yoshikawa,
Emergence of Pendular and Rotary Motions of a Centimeter-SizedMetallic Sheet under Stationary Photoirradiation,
The Journal of Physical Chemisty C 122, 2747-2752 (2018).

Masakazu Kuze, Hiroyuki Kitahata, Oliver Steinbock, and *Satoshi Nakata,
Distinguishing the dynamic fingerprints of two- and three-dimensional chemical waves in microbeads,
Journal of Physical Chemistry A 122, 1967-1971 (2018).

Ryoichi Tenno, You Gunjima, Miyu Yoshii, Hiroyuki Kitahata, Jerzy Gorecki, Nobuhiko Jessis Suematsu, and *Satoshi Nakata,
Period of oscillatory motion of a camphor boat determined by the dissolution and diffusion of camphor molecules,
Journal of Physical Chemistry B 122, 2610-2615 (2018).

Yoshiaki Kinosita, Yoshitomo Kikuchi, Nagisa Mikami, Daisuke Nakane, Takayuki Nishizaka,
Unforeseen swimming and gliding mode of an insect gut symbiont, Burkholderia sp. RPE64, with wrapping of the flagella around its cell body,
The ISME Journal 12, 838-848 (2018).

Cornelia Monzel, Alexandra S. Becker, Rainer Saffrich, Patrick Wuchter, Volker Eckstein, Anthony D. Ho & *Motomu Tanaka,
Dynamic cellular phynotyping defines specific mobilization mechanisms of human hematopoietic stem and progenitor cells induced by SDF1α versus synthetic agents,
Scientific Reports 8, 1841 (2018).

Aya Miyagawa-Hayashino,corresponding, Hajime Yoshifuji, Koji Kitagori, Shinji Ito, Takuma Oku, Yoshitaka Hirayama, Adeeb Salah,Toshiki Nakajima, Kaori Kiso, Norishige Yamada, Hironori Haga, and *Tatsuaki Tsuruyama,
Increase of MZB1 in B cells in systemic lupus erythematosus: proteomic analysis of biopsied lymph nodes.,
Arthritis Research & Therapy 20, 13 (2018).

Suyong Re, Shigehisa Watabe, Wataru Nishima, Eiro Muneyuki, Yoshiki Yamaguchi, Alexander D. MacKerell Jr. and *Yuji Sugita,
Characterization of Conformational Ensembles of Protonated N-glycans in the Gas-Phase,
Scientific Reports 8, 1644 (2018).

Salomé Mielke, Taichi Habe, Mariam Veschgini, Xianhe Liu, Kenichi Yoshikawa, Marie Pierre Krafft, and *Motomu Tanaka,
Emergence of Strong Nonlinear Viscoelastic Response of Semifluorinated Alkane Monolayers,
Langmuir 34(7), 2489-2496 (2018).

*Tomohiko G. Sano and Hirofumi Wada,
Snap-buckling in asymmetrically constrained elastic strips,
Physical Review E 97, 013002 (2018).

Salomé Mielke, Taichi Habe, Mariam Veschgini, Xianhe Liu, Kenichi Yoshikawa, Marie Pierre Krafft and Motomu Tanaka,
Emergence of Strong Nonlinear Viscoelastic Response of Semifluorinated Alkane Monolayers,
Langmuir 34, 2489−2496 (2018).

Koh M. Nakagawa and *Hiroshi Noguchi,
Bilayer sheet protrusions and budding from bilayer membranes induced by hydrolysis and condensation reactions,
Soft Matter 14, 1397-1407 (2018).

*Satoshi Nakata, Katsuhiko Kayahara, Hiroya Yamamoto, Paulina Skrobanska, Jerzy Gorecki, Akinori Awazu, Hiraku Nishimori, and Hiroyuki Kitahata,
Reciprocating motion of a self-propelled rotor induced by forced halt and release operations,
Journal of Physical Chemistry C 122, 3482-3487 (2018).

Toshiaki Kanai, *Wei Guo, Makoto Tsubota,
Flows with fractional quantum circulation in Bose-Einstein condensates induced　by nontopological phase defects,
Physical Review A 97, 013612/1-5 (2018).

Giordano Rampioni, Francesca D’Angelo, Marco Messina, Alessandro Zennaro, Yutetsu Kuruma, Daniela Tofani, Livia Leonia, and *Pasquale Stano,
Synthetic cells produce a quorum sensing chemical signal perceived by Pseudomonas aeruginosa,
Chemical Communications, in press (2018).

*Takaki Yamamoto and Masaki Sano,
Theoretical model of chirality-induced helical self-propulsion,
Physical Review E 97, 012607/1-11 (2018).

Satoshi Takatori, Hikari Baba, Takatoshi Ichino, Chwen-Yang Shew and Kenichi Yoshikawa,
Cooperative standing-horizontal-standing reentrant transition for numerous solid particles under external vibration,
Scientific Reports 8(437), 1-11 (2018).

Daiki Nishiguchi, Junichiro Iwasawa, Hong-Ren Jiang and Masaki Sano,
Flagellar dynamics of chains of active Janus particles fueled by an AC electric field,
New Journal of Physics 20, 015002/1-14 (2018).

*Fuyuki Nabeshima, Kosuke Nagasawa, and Atsutaka Maeda,
Superconducting fluctuations in FeSe0.5Te0.5 thin films probed via microwave spectroscopy,
Physical Review B97, 024504/1-6 (2018).

Kazuya Maeda, Takayuki Narumi, Rinto Anugraha, Hirotaka Okabe, Kazuhiro Hara, *Yoshiki Hidaka,
Sub-Diffusion in Electroconvective Turbulence of Homeotropic Nematic Liquid Crystals,
Journal of the Physical Society of Japan 87, 014401/1-5 (2018).

∗Yoshiki Hidaka, Kosuke Ijigawa, Seung-Yong Kwak, Noriko Oikawa, Hirotaka Okabe, Kazuhiro Hara,
Information Reduction for Chaotic Patterns,
Forma 33, S3-S7 (2018).

*Jun Yoneda, Kenta Takeda, Tomohiro Otsuka, Takashi Nakajima, Matthieu R. Delbecq, Giles Allison, Takumu Honda, Tetsuo Kodera, Shunri Oda, Yusuke Hoshi, Noritaka Usami, Kohei M. Itoh, and Seigo Tarucha,
A quantum-dot spin qubit with coherence limited by charge noise and fidelity higher than 99.9%,
Nature Nanotechnology 13, 102-106 (2018).

---

2017

Naoko Nakagawa and Shin-ichi Sasa,
Liquid-Gas Transitions in Steady Heat Conduction,
Physical Review Letters 119, 260602/1-6 (2017).

Kazuya Kaneko, Eiki Iyoda, and Takahiro Sagawa,
Saturation of entropy production in quantum many-body systems,
Physical Review E 96, 062148/1-10 (2017).

Takuma Hoshino, *Shigeyuki Komura, and David Andelman,
Permeation through a lamellar stack of lipid mixtures,
EPL 120, 18004 (4pp) (2017).

*Tatsuaki Tsuruyama,
Channel capacity of coding system on Tsallis entropy and q-Statistics,
Entropy 19, 682 (2017).

Takafumi Tomita, Shuta Nakajima, Ippei Danshita, Yosuke Takasu and Yoshiro Takahashi,
Observation of the Mott insulator to superfluid crossover of a driven-dissipative Bose-Hubbard system,
Science Advances 3, e1701513 (2017).

Kei Fujiwara, Takuma Adachi, Nobuhide Doi,
Artificial Cell Fermentation as a Platform for Highly Efficient Cascade Conversion,
ACS Synthetic Biology 7(2), 363-370 (2017).

*Hiroki Saito, Masaya Kato,
Machine Learning Technique to Find Quantum Many-Body Ground States of Bosons on a Lattice,
Journal of the Physical Society of Japan 87, 014001/1-8 (2017).

Mateusz Borkowski, Alexei A. Buchachenko, Roman Ciuryło, Paul S. Julienne, Hirotaka Yamada, Yuu Kikuchi, Kakeru Takahashi, Yosuke Takasu, and Yoshiro Takahashi,
Beyond-Born-Oppenheimer effects in sub-kHz-precision photoassociation spectroscopy of ytterbium atoms,
Physical Review A 96, 063405 (2017).

*Shin-Ichiro Ei, Hiroyuki Kitahata, Yuki Koyano, Masaharu Nagayama,
Interaction of non-radially symmetric camphor particles,
Physica D 366, 10-26 (2017).

Kazunori Yamamoto, *Akatsuki Kimura,
An anisotropic attraction model for the diversity and robustness of cell arrangement in nematodes.,
Development 144, 4437-4449 (2017).

Chwen-Yang Shew, Soutaro Oda and *Kenichi Yoshikawa,
Localization switching of a large object in a crowded cavity: A rigid/soft object prefers surface/inner positioning,
The Journal of Chemical Physics 149, 204901/1-11 (2017).

*Kei Fujiwara, *Miho Yanagisawa,
Liposomal internal viscosity affects the fate of membrane deformation induced by hypertonic treatment,
Soft Matter 13, 9192-9198 (2017).

*Kei Fujiwara, *Miho Yanagisawa,
Liposomal internal viscosity affects the fate of membrane deformation induced by hypertonic treatment,
Soft Matter 13, 9192-9198 (2017).

Kenji Nishizawa, Kei Fujiwara, Masahiro Ikenaga, Nobushige Nakajo, Miho Yanagisawa, *Daisuke Mizuno,
Universal glass-forming behavior of in vitro and living cytoplasm,
Scientific Reports 7, 15143 (2017).

Kenji Nishizawa, Kei Fujiwara, Masahiro Ikenaga, Nobushige Nakajo, Miho Yanagisawa , and Daisuke Mizuno,
Universal glass-forming behavior of in vitro and living cytoplasm,
Scientific Reports 7, 15143 (2017).

Kenji Nishizawa, Kei Fujiwara, Masahiro Ikenaga, Nobushige Nakajo, Miho Yanagisawa, *Daisuke Mizuno,
Universal glass-forming behavior of in vitro and living cytoplasm,
Scientific Reports 7, 15143 (2017).

*Kentaro Suzuki, Koichiro Machida, Kazuo Yamaguchi, and Tadashi Sugawara,
Photo-triggered Recognition between Host and Guest Compounds in a Giant Vesicle Encapsulating Photo-Pierceable Vesicles,
Chemistry and Physics of Lipids 210, 70-75 (2017).

Isala Dueramae, Shingo Fukuzawa, Naoki Shinyashiki, Shin Yagihara, *Rio Kita,
Dynamics of amyloid-like aggregation and gel formation of hen egg-white lysozyme in highly concentrated ethanol solution,
Journal of Biorheology 31, 21-28 (2017).

Yongjun Chen, Koichiro Sadakane, Hiroki Sakuta, Chenggui Yao and *Kenichi Yoshikawa,
Spontaneous Oscillations and Synchronization of Active Droplets on a Water Surface via Marangoni Convection,
Langmuir 33, 12362-12368 (2017).

*Akito Noiri, Tatsuki Takakura, Toshiaki Obata, Tomohiro Otsuka, Takashi Nakajima, Jun Yoneda, and Seigo Tarucha,
Cotunneling spin blockade observed in a three-terminal triple quantum dot,
Physical Review B 96, 155414/1-7 (2017).

Yuto Hosaka, Kento Yasuda, Isamu Sou, Ryuichi Okamoto, and *Shigeyuki Komura,
Thermally driven elastic micromachines,
Journal of the Physical Sciety of Japan 86, 113801/1-4 (2017).

*Yuji sasaki, Motoshi Ueda, Khoa V. Le, Reo Amano, Shin Sakane, Shuji Fujii, Fumito Araoka, and Hiroshi Orihara,
Polymer-stabilized micropixelated liquid crystals with tunable optical properties fabricated by double templating,
Advanced Materials 29, 1703054/1-7 (2017).

Isamu Sou, Ryuichi Okamoto, *Shigeyuki Komura, and Jean Wolff,
Coexistences of lamellar phases in ternary surfactant solutions,
Soft Materials 15, 272-281 (2017).

Kenji Nishizawa, Marcel Bremerich, Heev Ayade, Christoph F. Schmidt, Takayuki Ariga, Daisuke Mizuno*,
Feedback-tracking microrheology in living cells,
SCIENCE ADVANCES 3, e1700318 (2017).

Schenz Daniel, Yasuaki Shima, Shigeru Kuroda, Toshiyuki Nakagaki and *Kei-ichi Ueda,
A mathematical model for adaptive vein formation during exploratory migration of Physarum polycephalum: routing while scouting,
Journal of Physics: Applied Physics 50, 434001/1-14 (2017).

*Hiroshi Noguchi,
Acceleration and suppression of banana-shapedprotein-induced tubulation by addition of small membrane inclusions of isotropic spontaneous curvatures,
Soft Matter 13, 7771-7779 (2017).

*Tomohiro Otsuka, Takashi Nakajima, Matthieu R. Delbecq, Shinichi Amaha, Jun Yoneda, Kenta Takeda, Giles Allison, Peter Stano, Akito Noiri, Takumi Ito, Daniel Loss, Arne Ludwig, Andreas D. Wieck, and *Seigo Tarucha,
Higher-order spin and charge dynamics in a quantum dot-lead hybrid system,
Scientific Reports 7, 12201-1-7 (2017).

Shoko Uemoto, Taro Toyota, Luca Chiari, Tomonori Nomoto, *Masanori Fujinami,,
Assemblies of molecular aggregates in the blebbing motion of an oil droplet on an aqueous solution containing surfactant,
Colloids and Surfaces A: Physicochemical and Engineering Aspects 529, 373-379 (2017).

*Shinji Watanabe, Toshio Ando,
High-speed XYZ-nanopositioner for scanning ion conductance microscopy,
Applied Physics Letters 111, 113606/1-4 (2017).

Shuji Tamaki, Makiko Sasada, and *Keiji Saito,
Heat Transport via Low-Dimensional Systems with Broken Time-Reversal Symmetry,
Physical Review Letters 119, 110602 (2017).

Kaori Kiso, Hajime Yoshifuji, Takuma Oku, Masaki Hikida, Koji Kitagori, Yoshitaka Hirayama, Toshiki Nakajima, Hironori Haga, Tatsuaki Tsuruyama, *Aya Miyagawa-Hayashino,
Transgelin-2 is upregulated on activated B-cells and expressed in hyperplastic follicles in lupus erythematosus patients.,
PLoS One 12, 9 (2017).

Atsuji Kodama, Yuka Sakuma, *Masayuki Imai, Toshihiro Kawakatsu, Nicolas Puff, and Miglena I. Angelova,
Migration of Phospholipid Vesicles Can Be Selectively Driven by Concentration Gradients of Metal Chloride Solutions,
Langmuir 33, 10698-10706 (2017).

Masaya Kato, Xiao-Fei Zhang, and *Hiroki Saito,
Moving obstacle potential in a spin-orbit-coupled Bose-Einstein condensate,
Physical Review A 96, 033613/1-8 (2017).

*Satoshi Honda and *Taro Toyota,
Photo-triggered solvent-free metamorphosis of polymeric materials.,
Nature Communications 8, 502 (2017).

*Hironori Hoshino, Shin Nakamura,
Phenomenological construction of new dictionaries for holographic conductors,
Physical Review D 96, 066006/1-10 (2017).

Doreen Niether, Tsubasa Kawaguchi, Jana Hovancova, Kazuya Eguchi, Jan K. G. Dhont, *Rio Kita, and *Simone Wiegand,
Role of hydrogen bonding of cyclodextrin-drug complexes probed by thermodiffusion,
Langmuir 33, 8483-8492 (2017).

*Eiki Iyoda, Kazuya Kaneko, Takahiro Sagawa,,
Fluctuation Theorem for Many-Body Pure Quantum States,
Physical Review Letters 119, 100601/1-6 (2017).

Kazusa Beppu, Ziane Izri, Jun Gohya, Kanta Eto, Masatoshi Ichikawa, *Yusuke T. Maeda,
Geometry-driven collective ordering of bacterial vortices,
Soft Matter 13, 5038-5043 (2017).

*Shuji Ishihara, Philippe Marcq, Kaoru Sugimura,
From cells to tissue: A continuum model of epithelial mechanics,
Physical Review E 96, 022418 (2017).

*Kei Fujiwara, Tsunehito Sawamura, Tatsuya Niwa, Tatsuki Deyama, Shin-ichiro M. Nomura, Hideki Taguchi, Nobuhide Doi,
In vitro transcription–translation using bacterial genome as a template to reconstitute intracellular profile,
Nucleic Acids Research 45(19), 11449-11458 (2017).

＊Natsuhiko Yoshinaga and Tanniemola B. Liverpool,
Hydrodynamic interactions in dense active suspensions: From polar order to dynamical clusters,
Physical Review E Rapid Communications 96, 020603(R) (2017).

Hiroaki Ito, Masahiro Makuta, Yukinori Nishigami, and *Masatoshi Ichikawa,
Active materials integrated with actomyosin,
Journal of the Physical Society of Japan 86, 101001/1-6 (2017).

*Yasuyuki Kimura,
Hydrodynamically Induced Collective Motion of Optically Driven Colloidal Particles on a Circular Path,
Journal of the Physical Society of Japan 86, 101003/1-7 (2017).

Yasuyuki Kobayashi*, Hiroyuki Kitahata, and Masaharu Nagayama,
Sustained dynamics of a weakly excitable system with nonlocal interactions,
Physical Review E 96, 022213/1-8 (2017).

Yuki Sakamoto, and *Shoichi Toyabe,
Assembly of a functional and responsive microstructure by heat bonding of DNA-grafted colloidal brick,
Scientific Reports 7, 9104 (2017).

Masami Noda, Yue Ma, Yuko Yoshikawa, Tadayuki Imanaka, Toshiaki Mori, Masakazu Furuta, Tatsuaki Tsuruyama and Kenichi Yoshikawa,
A single-molecule assessment of the protective effect of DMSO against DNA double-strand breaks induced by photo-and g-ray-irradiation, and freezing,
Scientific Reports 7, 8557/ 1-8 (2017).

Marcel Hörning, François Blanchard, Akihiro Isomura, andKenichi Yoshikawa,
Dynamics of spatiotemporal line defects and chaos control in complex excitable systems,
Scientific Reports 7, 7757/1-9 (2017).

Kento Yasuda, Yuto Hosaka, Mizuki Kuroda, Ryuichi Okamoto, and *Shigeyuki Komura,
Elastic three-sphere microswimmer in a viscous fluid,
Journal of the Physical Sciety of Japan 86, 093801/1-4 (2017).

Marcel Hörning, Masaki Nakahata, Philip Linke, Akihisa Yamamoto, Mariam Veschgini, Stefan Kaufmann, Yoshinori Takashima, Akira Harada & *Motomu Tanaka,
Dynamic mechano-regulation of myoblast cells on supramolecular hydrogels cross-linked by reversible host-guest interactions,
Scientific Reports 7, 7660 (2017).

Itsuki Kunita, *Kei-ichi Ueda, Dai Akita, Sshigeru Kuroda and Toshiyuki Nakagaki,
Behavioural differentiation induced by environmental variation when crossing a toxic zone in an amoeba,
Journal of Physics D: Applied Physics 50, 354002/1-15 (2017).

Yosuke Takasu, Yoshiaki Fukushima, Yusuke Nakamura, and Yoshiro Takahashi,
Magnetoassociation of a Feshbach molecule and spin-orbit interaction between the ground and electronically,
Physical Review A 96, 023602 (2017).

Hiroki Saito,
Solving the Bose-Hubbard model with machine learning,
Journal of the Physical Society of Japan 86, 093001/1-4 (2017).

*Yuki Koyano, Marian Gryciuk, Paulina Skrobanska, Maciej Malecki, Yutaka Sumino, Hiroyuki Kitahata, and Jerzy Gorecki,
Relationship between the size of a camphor-driven rotor and its angular velocity,
Physical Review E 96, 021609/1-8 (2017).

*Ryuichi Okamoto, Shigeyuki Komura, and Jean-Baptiste Fournier,
Dynamics of a bilayer membrane coupled to a two-dimensional cytoskeleton: Scale transfers of membrane deformations,
Physical Review E 96, 012416/1-10 (2017).

Aoi Yoshida, Shoto Tsuji, Hiroaki Taniguchi, Takahiro Kenmotsu, Koichiro Sadakane, *Kenichi Yoshikawa,
Manipulating Living Cells to Construct a 3D Single-Cell Assembly without an Artificial Scaffold,
Polymers 9, 319/2-10 (2017).

Kazusa Beppu, Ziane, Izri, Jun Gohya, Kanta Eto, Masatoshi Ichikawa, and *Yusuke T. Maeda,
Geometry-driven collective ordering of bacterial vortices,
Soft Matter 13, 5038 (2017).

*Yohsuke T. Fukai and Kazumasa A. Takeuchi,
Kardar-Parisi-Zhang Interfaces with Inward Growth,
Physical Review Letters 119, 030602/1-5 (2017).

Daigo Yamamoto, Ryota Yamamoto, Takahiro Kozaki, Akihisa Shioi, Syuji Fujii and *Kenichi Yoshikawa,
Periodic Motions of Solid particles with Various Morphology under a DC Electrostatic Field,
Chemistry Letters 46, 1470-1472 (2017).

*Akito Noiri, Kento Kawasaki, Tomohiro Otsuka, Takashi Nakajima, Jun Yoneda, Shinichi Amaha, Matthieu Delbecq, Kenta Takeda, Giles Allison, Arne Ludwig, Andreas D. Wieck, and *Seigo Tarucha,
A triangular triple quantum dot with tunable tunnel couplings,
Semiconductor Science and Technology 32, 084004-1-5 (2017).

Keisuke Mae, Hidetoshi Toyama, Erika Okita Nawa, Daigo Yamamoto, Akihisa Shioi, Yongjun Chen, *Kenichi Yoshikawa, Fumiyuki Toshimitsu, Naotoshi Nakashima and Kazunari Matsuda,
Self-Organized Micro-Spiral of Single-Walled Carbon Nanotubes,
Scientific Reports 7, 5267/1-12 (2017).

Dai Akita, Daniel Schenz, Shigeru Kuroda, Katsuhiko Sato, Kei-Ichi Ueda, *Toshiyuki Nakagaki,
Current Reinforcement Model Reproduces Center-In-Center Vein Trajectory of Physarum Polycephalum,
Development, Growth & Differentation 59, 465-470 (2017).

Chikako Kurokawa, Kei Fujiwara, Masamune Morita, Ibuki Kawamata, Yui Kawagishi, Atsushi Sakai, Yoshihiro Murayama, Shin-ichiro M. Nomura, Satoshi Murata, *Masahiro Takinoue, and *Miho Yanagisawa,
DNA cytoskeleton for stabilizing artificial cells,
Proceedings of the National Academy of Sciences of the United States of America 114, 7228-7233 (2017).

Chikako Kurokawa, Kei Fujiwara, Masamune Morita, Ibuki Kawamata, Yui Kawagishi, Atsushi Sakai, Yoshihiro Murayama, M Nomura Shin-ichiro, Satoshi Murata, *Masahiro Takinoue, *Miho Yanagisawa,
DNA cytoskeleton for stabilizing artificial cells,
Proceedings of the National Academy of Sciences of the United States of America 114, 7228-7233 (2017).

Takahiro Ishida, Yohann Duguet, *Takahiro Tsukahara,
Turbulent bifurcations in intermittent shear flows: from puffs to oblique stripes,
Physical Review Fluids 2, 073902/1-18 (2017).

Takahisa Matsuzaki, Hiroaki Ito, Veronika Chevyreva, Ali Makky, Stefan Kaufmann, Kazuki Okano, Naritaka Kobayashi, Masami Suganuma, Seiichiro Nakabayashi, Hiroshi Y. Yoshikawa and *Motomu Tanaka,
Adsorption of galloyl catechin aggregates significantly modulates membrane mechanics in the absence of biochemical cues,
Physical Chemistry Chemical Physics 19, 9937-19947 (2017).

*Yuma Fujimoto, Takahiro Sagawa, Kunihiko Kaneko,,
Hierarchical prisoner’s dilemma in hierarchical game for resource competition,
New Journal of Physics 19, 073008/1-12 (2017).

*Takashi Nakajima, Matthieu R. Delbecq, Tomohiro Otsuka, Peter Stano, Shinichi Amaha, Jun Yoneda, Akito Noiri, Kento Kawasaki, Kenta Takeda, Giles Allison, Arne Ludwig, Andreas D. Wieck, Daniel Loss, and *Seigo Tarucha,
Robust single-shot spin measurement with 99.5% fidelity in a quantum dot array,
Physical Review Letters 119, 017701-1-6 (2017).

*Hiroki Yamaguchi, Kyogo Kawaguchi, Takahiro Sagawa,,
Dynamical crossover in a stochastic model of cell fate decision,
Phyical Review E 96, 012401/1-8 (2017).

*Jerzy Gorecki, Hiroyuki Kitahata, Nobuhiko J. Suematsu, Yuki Koyano, Paulina Skrobanska, Marian Gryciuk, Maciej Malecki, Takahiro Tanabe, Hiroya Yamamoto, and Satoshi Nakata,
Unidirectional motion of a camphor disk on water forced by interactions between surface camphor concentration and dynamically changing boundaries,
Physical Chemistry Chemical Physics 19, 18767-18772 (2017).

Yuki Hara, Kenta Adachi, Shunsuke Kagohashi, Kazuo Yamagata, Hideyuki Tanabe, Shinji Kikuchi, Sei-Ichi Okumura, and *Akatsuki Kimura,
Scaling relationship between intra-nuclear DNA density and chromosomal condensation in metazoan and plant.,
Chromosome Science 19, 43-49 (2017).

Daisuke Nakane and Takayuki Nishizaka*,
Asymmetric distribution of type IV pili triggered by directional light in unicellular cyanobacteria,
Proceedings of the National Academy of Sciences 114, 6593-6598 (2017).

Yuta Shimizu, Yuko Yoshikawa, Takahiro Kenmotsu, Seiji Komeda and *Kenichi Yoshikawa,
Conformational transition of DNA by dinuclear Pt(II) complexes causes cooperative inhibition of gene expression,
Chemical Physics Letters 678, 123-129 (2017).

Ritsuko Arai, Takeshi Sugawara, Yuko Sato, Yohei Minakuchi, Atsushi Toyoda, Kentaro Nabeshima, Hiroshi Kimura, *Akatsuki Kimura,
Reduction in chromosome mobility accompanies nuclear organization during early embryogenesis in Caenorhabditis elegans.,
Scientific Reports 19, 43-49 (2017).

*Kei Nishi, Shogo Suzuki, Katsuhiko Kayahara, Masakazu Kuze, Hiroyuki Kitahata, *Satoshi Nakata, and *Yasumasa Nishiura,
Achilles’ heel of a traveling pulse subject to a local external stimulus,
Physical Review E 95, 062209/1-8 (2016).

Kazumasa A. Takeuchi,
1/f^α power spectrum in the Kardar-Parisi-Zhang universality class,
Journal of Physics A: Mathematical and Theoretical 50, 264006/1-17 (2017).

*Mark Fricker, Dai Akita, Luke L. Heaton, Nick Jones, Barak Obara and Toshiyuki Nakagaki,
Automated analysis of Physarum network structure and dynamics,
Journal of Physics D: Applied Physics 50, 254005/1-14 (2017).

*G. N. Phan, Kousuke Nakayama, K. Sugawara, T. Sato, T. Urata, Yoichi Tanabe, Katsumi Tanigaki, Fuyuki Nabeshima, Yoshinori Imai, Atsutaka Maeda, and Takashi Takahashi,
Effects of strain on the electronic structure, superconductivity, and nematicity in FeSe studiedby angle-resolved photoemission spectroscopy,
Physical Review B95, 224507/1-6 (2017).

Hideo Shindou, Hideto Koso, Junko Sasak, Hiroki Nakanishi, Hiroshi Sagara,h Koh M. Nakagawa, Yoshikazu Takahashi, Daisuke Hishikawa, Yoshiko Iizuka-Hishikawa, Fuyuki Tokumasu, Hiroshi Noguchi, Sumiko Watanabe, Takehiko Sasaki, and Takao Shimizu,
Docosahexaenoic acid preserves visual function by maintaining correct disc morphology in retinal photoreceptor cells,
Journal of Biological Chemistry 292, 12054-12064 (2017).

Takuya Umedachi, Kentaro Ito, Ryo Kobayashi, Akio Ishiguro and Toshiyuki Nakagaki,
Response to Various Periods of Mechanical Stimuli in Physarum Plasmodium,
Journal of Physics D: Applied Physics 50, 254002/1-7 (2017).

Yumino Hayase, Takahiro Sakaue and Hiizu Nakanishi,
Compressive response and helix formation of a semiflexible polymer confined in a nanochannel,
Physical Review E 95, 052502/1-6 (2017).

Yuto Hosaka, Kento Yasuda, Ryuichi Okamoto, *Shigeyuki Komura,
Lateral diffusion induced by active proteins in a biomembrane,
Physical Review E 95, 052407/1-10 (2017).

Adeeb Salah, Hajime Yoshifuji, Shinji Ito, Koji Kitagori, Kaori Kiso, Norishige Yamada, Toshiki Nakajima, Hironori Haga, Tatsuaki Tsuruyama, and *Aya Miyagawa-Hayashino,
High Expression of Galectin-3 in Patients with IgG4-Related Disease: A Proteomic Approach.,
Pathology Research International 2017, 9312142 (2017).

Kanta Tsumoto and *Kenichi Yoshikawa,
The Aqueous Two Phase System (ATPS) Deserves Plausible Real-World Modeling for the Structure and Function of Living Cells,
MRS Advances 2, 2407-2413 (2017).

Naoko Ueno, Taisuke Banno, Arisa Asami, Yuki Kazayama, Yuya Morimoto, Toshihisa Osaki, Shoji Takeuchi, Hiroyuki Kitahata, and *Taro Toyota,
Self-propelled motion of monodisperse underwater oil droplets formed by a microfluidic device,
Langmuir 33, 5393-5397 (2017).

Naoko Ueno, Taisuke Banno, Arisa Asami, Yuki Kazayama, Yuya Morimoto, Toshihisa Osaki, Shoji Takeuchi, Hiroyuki Kitahata, *Taro Toyota,
Self-propelled motion of monodisperse underwater oil droplets formed by a microfluidic device,
Langmuir 33, 5393-5397 (2017).

Keita Kamino, Yohei Kondo, Akihiko Nakajima, Mai Honda-Kitahara, Kunihiko Kaneko, Satoshi Sawai,
Fold-change detection and scale-invariance of cell-cell signaling in social amoeba,
Proceedings of the National Academy of Sciences of the United States of America 114(21), E4149-E4157 (2017).

Hiroshi Noguchi and Jean-Baptiste Fournier,
Membrane structure formation induced by two types of banana-shaped proteins,
Soft Matter 13, 4099-4111 (2017).

*Meydi Ferrier, Tomonori Arakawa, Tokuro Hata, Ryo Fujiwara, Raphaëlle Delagrange, Richard Deblock, Yoshimichi Teratani, Rui Sakano, Akira Oguri, *Kensuke Kobayashi,
Quantum fluctuations along symmetry crossover in a Kondo-correlated quantum dot,
Physical Review Letters 118, 196803/1-5 (2017).

*Masamichi Nakajima, K. Yanase, Fuyuki Nabeshima, Yoshinori Imai, Atsutaka Maeda, and Setsuko Tajima,
Gradual Fermi-surface modification in orbitally ordered state of FeSe revealedby optical spectroscopy,
Physical Review B95, 184502/1-5 (2017).

*Takuya Saito and Takahiro Sakaue,
Complementary mode analyses between sub-and superdiffusion,
Physical Review E 95, 042143 (2017).

Tomohiko G. Sano, Tetsuo Yamaguchi, and Hirofumi Wada,
Slip Morphology of Elastic Strips on Frictional Rigid Substrates,
Physical Review Letters 118, 178001 (2017).

*Tomoaki Ota, Masayuki Hashisaka, Koji Muraki, and Toshimasa Fujisawa,
Negative and positive cross-correlations of current noises in quantum Hall edge channels at bulk filling factor v =1,
Journal of Physics: Condensed Matter 29, 225302 (2017).

*Hiroshi Orihara, Nobutaka Sakurai, Yuji Sasaki, and Tomoyuki Nagaya,
Direct observation of coupling between orientation and flow fluctuations in a nematic liquid crystal at equilibrium,
Physical Review E 95, 042705/1-6 (2017).

*Yoshinori Imai, Yuichi Sawada, Fuyuki Nabeshima, Daisuke Asami, Masataka Kawai, Atsutaka Maeda,
Control of structural transiton in FeSe1-xTex thin films by changing substrate materials,
Scientific Reports 7, 46653/1-5 (2017).

*Shuichi Iwakiri, Yasuhiro Niimi, Kensuke Kobayashi,
Dynamics of pure spin current in high-frequency quantum regime,
Applied Physics Express 10, 053001/1-4 (2017).

*Kyogo Kawaguchi, Ryoichiro Kageyama and *Masaki Sano,
Topological defects control collective dynamics in neural progenitor cell cultures,
Nature 545, 327-332 (2017).

*Yuliang Jin, Hajime Yoshino,
Exploring the complex free energy landscape of the simplest glass by rheology,
Nature Communications 8, 14935 (2017).

Takaaki Iguchi, Takeyoshi Sugaya, and *Yukio Kawano,
Silicon-immersed terahertz plasmonic structures,
Applied Physics Letters 110, 151105-1-4 (2017).

Shoko Fujimura, Yuko Ito, Mitsunori Ikeguchi, Kengo Adachi, Junichiro Yajima, Takayuki Nishizaka,
Dissection of the angle of single fluorophore attached to the nucleotide in corkscrewing microtubules,
Biochemical and Biophysical Research Communications 485, 614-620 (2017).

Takaki Yamamoto and Masaki Sano,
Chirality-induced helical self-propulsion of cholesteric liquid crystal droplets,
Soft Matter 13, 3328-3333 (2017).

Masaya Kato, Xiao-Fei Zhang, and *Hiroki Saito,
Vortex pairs in a spin-orbit coupled Bose-Einstein condensate,
Physical Review A 95, 043605/1-7 (2017).

*Takahiro Sakaue, Jean-Charles Walter, Enrico Carlon and Carlo Vanderzande,
Non-Markovian dynamics of reaction coordinate in polymer folding,
Soft Matter 13, 3174-3181 (2017).

Kento Yasuda, Ryuichi Okamoto, and *Shigeyuki Komura,
Swimmer-microrheology,
Journal of the Physical Society of Japan 86, 043801/1-4 (2017).

*Bernd Meyer, Cedrick Ansorge and Toshiyuki Nakagaki,
The Role of Noise in Self-organized Decision Making by the True Slime Mold Physarum polycephalum,
PLOS ONE 12, e0172933 (2017).

Tomoyuki Mano, *Jean-Baptiste Delfau, Junichiro Iwasawa, and Masaki Sano,
Optimal run-and-tumble based transportation of a Janus particle with active steering,
Proceedings of the National Academy of Sciences 114, E2580–E2589 (2017).

Kento Yasuda, Ryuichi Okamoto, and *Shigeyuki Komura,
Anomalous diffusion in viscoelastic media with active force dipoles,
Physical Review E 95, 032417/1-14 (2017).

Swaminath Bharadwaj, *Palakurissi B. Sunil Kumar, Shigeyuki Komura, Abhijit P. Deshpande,
Spherically symmetric solvent is sufficient to explain lower critical solution temperature in polymer solutions,
Macromolecular Theory and Simulations 26, 1600073/1-11 (2017).

*Jacopo De Nardis, Pierre Le Doussal, and Kazumasa A. Takeuchi,
Memory and Universality in Interface Growth,
Physical Review Letters 118, 125701/1-5 (2017).

*Tomo Kurimura, Yoshiko Takenaka, Satoru Kidoaki, and *Masatoshi Ichikawa,
Fabrication of gold microwires by drying goldnanorods suspensions,
Advanced Materials Interfaces 1601125, 1-5 (2017).

Andreas Dechant, Adrian Baule, and *Shin-ichi Sasa,
Gaussian white noise as a resource for work extraction,
Physical Review E 95, 032132/1-12 (2017).

Xiao-Fei Zhang, Masaya Kato, Wei Han, Shou-Gang Zhang, and Hiroki Saito,
Spin-orbit-coupled Bose-Einstein condensates held under a toroidal trap,
Physical Review A 95, 033620 (2017).

Kento Yasuda, Ryuichi Okamoto, *Shigeyuki Komura, and Alexander S. Mikhailov,
Localization and diffusion of tracer particles in viscoelastic media with active force dipoles,
EPL 117, 38001/1-7 (2017).

K. Sato, I. Kunita, Y. Takikawa, D. Takeuchi, Y. Tanaka, T. Nakagaki and *H. Orihara,
Direct observation of orientation distributions of actin filaments in a solution undergoing shear banding,
Soft Matter 13, 2708-2716 (2017).

Rinko Kubota, Yusuke Yamashita, Takahiro Kenmotsu, Yuko Yoshikawa, Kenji Yoshida, Yoshiaki Watanabe, Tadayuki Imanaka and *Kenichi Yoshikawa,
Double-Strand Breaks in Genome-Sized DNA Caused by Ultrasound,
ChemPhysChem 18, 959-964 (2017).

Makoto Iima, Hiroshi Kori and Toshiyuki Nakagaki,
Studies of the phase gradient at the boundary of the phase diffusion equation, motivated by peculiar wave patterns of rhythmic contraction in the amoeboid movement of Physarum polycephalum,
Journal of Physics D: Applied Physics 50, 154004/1-10 (2017).

*Masayuki Hashisaka, Naoaki Hiyama, Takafumi Akiho, Koji Muraki, *Toshimasa Fujisawa,
Waveform measurement of charge- and spin-density wavepackets in a chiral Tomonaga–Luttinger liquid,
Nature Physics 13, 559-562 (2017).

Kenji Kimura, Alexandre Mamane, Tohru Sasaki, Kohta Sato, Jun Takagi, Ritsuya Niwayama, Lars Hufnagel, Yuta Shimamoto, Jean-François Joanny, Seiichi Uchida, and Akatsuki Kimura,
Endoplasmic reticulum-mediated microtubule alignment governs cytoplasmic streaming.,
Nature Cell Biology 19, 399-406 (2017).

Takashi Kurihara, Msato Aridome, Heev Ayade, Irwin Zaid, *Daisuke Mizuno,
Non-Gaussian limit fluctuations in active swimmer suspensions,
Physical Review E 95, 030601(R) (2017).

Isala Dueramae, Masaru Yoneyama, Naoki Shinyashiki, Shin Yagihara, and *Rio Kita,
Self-assembly of acetylated dextran with various acetylation degrees in aqueous solutions: Studied by light scattering,
Carbohydrate Polymers 159, 171-177 (2017).

*Ｍasahiko Ueda, Shin-ichi Sasa,
Replica symmetry breaking in trajectory space for the trap model,
Journal of Physics A: Mathematical and Theoretical 50, 125001/1-14 (2017).

*Sho Fujii, Ryuta Fukano, Yoshihito Hayami, Hiroaki Ozawa, Eiro Muneyuki, Noboru Kitamura, and *Masa-aki Haga,
Simultaneous Formation and Spatial Patterning of ZnO on ITO Surfaces by Local Laser-Induced Generation of Microbubbles in Aqueous Solutions of [Zn(NH₃)₄]²⁺,
ACS Applied Materials & Interfaces 9, 8413-8419 (2017).

*Kazuya Saito, Takaaki Ikeda, Yasuhisa Yamamura, Hideki Saitoh, Mafumi Hishida, Yutaro Kobayashi, Takeshi Fujita, and Junji Ichikawa,
Cell-quintupling: Structural phase transition in a molecular crystal, bis(trans-4-butylcyclohexyl)methanol,
The Journal of Chemical Physics 146, 074503 (2017).

*Kazuya Saito, Mafumi Hishida, Kent Koike, Shigenori Nagatomo, and Yasuhisa Yamamura,
X-ray study of molecular association in alcohols having bulkysubstituents,
Chemical Physics Letters 673, 74-77 (2017).

*Masato Itami, Shin-ichi Sasa,
Universal Form of Stochastic Evolution for Slow Variables in Equilibrium Systems,
Journal of Statistical Physics 167, 46-63 (2017).

Shigeru Kuroda, Seiji Takagi, Tetsu Saigusa and *Toshiyuki Nakagaki,
Physical ethology of unicellular organism,
Brain Evolution by Design -, 3-23 (2017).

Tatsuaki Tsuruyama,
Kinetic Stability Analysis of Protein Assembly on the Center Manifold around the Critical Point.,
BMC Systems Biology 11 (2017).

*Daiki Nishiguchi, Ken H. Nagai, Hugues Chate, and Masaki Sano,
Long-range nematic order and anomalous fluctuations in suspensions of swimming filamentous bacteria,
Physical Review E 95, 020601(R) /1-6 (2017).

*Takahiro Sakaue, Takuya Saito,
Active diffusion of model chromosomal loci driven by athermal noise,
Soft Matter 13, 81-87 (2017).

*Che-hsiu Hsueh, Wen-Chin Wu, and Makoto Tsubota,
Quantum crystallography of Rydberg-dressed Bose gases on a square lattice,
Physical Review A 95, 013631/1-5 (2017).

Yuji Higaki,Benjamin Fröhlich, Akihisa Yamamoto, Ryo Murakami,Makoto Kaneko, *Atsushi Takahara, and *Motomu Tanaka,
Ion-specific modulation of interfacial interaction potentials between solid substrates and cell-sized particles mediated via zwitterionic, super-hydrophilic poly(sulfobetaine) brushes,
The Journal of Physical Chemistry B 121, 1396−1404 (2017).

*Fuyuki Nabeshima, Yoshinori Imai, Ichiro Tsukada, and Atsutaka Maeda,
Growth and transport properties of FeSe/FeTe superlattice thin films,
Japanese Journal of Applied Physics 56, 020308 (2017).

*Hiroyuki Kitahata, Hiroya Yamamoto, Misato Hata, Yumihiko S. Ikura, *Satoshi Nakata,
Relaxation dynamics of the Marangoni convection roll structure induced by camphor concentration gradient,
Colloids and Surfaces A 520, 436-441 (2017).

Harukuni Ikeda, Kunimasa Miyazaki and *Giulio Biroli,
The Fredrickson-Anderson model with random pinning on Bethe lattices and its MCT transitions,
EPL 116, 56004/1-8 (2017).

Takuro Itoh, *Taro Toyota, Hiroyuki Higuchi, Michio M. Matsushita, Kentaro Suzuki, and *Tadashi Sugawara,
Cycle of charge carrier states with formation and extinction of a floating gate in an ambipolar tetracyanoquaterthienoquinoid-based field-effect transistor,
Chemical Physics Letters 671, 71-77 (2017).

Tomohiro G. Noguchi, *Yasutaka Iwashita, and Yasuyuki Kimura,
Dependence of the Internal Structure on Water/Particle Volume Ratio in an Amphiphilic Janus Particle–Water–Oil Ternary System: From Micelle-like Clusters to Emulsions of Spherical Droplets,
Langmuir 33, 1030-1036 (2017).

Seiji Komeda, Hiroki Yoneyama, Masako Uemura, Akira Muramatsu, Wakao Fukuda, Tadayuki Imanaka, Toshio Kanbe, Yuko Yoshikawa and *Kenichi Yoshikawa,
Specific Conformational Change in Giant DNA Caused by Anticancer Tetrazolato-Bridged Dinuclear Platinum(II) Complexes: Middle-Length Alkyl Substituents Exhibit Minimum Effect,
Inorganic Chemistry 56, 802–811 (2017).

---

2016

Yoriaki Nishioka, Fumiaki Kobayashi, Nobutaka Sakurai, *Yuji Sasaki, and Hiroshi Orihara,
Microscopic characterisation of self-assembled colloidal particles in electrohydrodynamic convection of a low-birefringence nematic liquid crystal,
Liquid Crystals 43(4), 427-435 (2016).

Gioia Carinci, Cristiana Giardina, Frank Redig, Tomohiro Sasamoto,
A generalized asymmetric exclusion process with Uq(sl2) stochastic duality,
Probability Theory and Related Fields 166(3), 887-933 (2016).

T. V. Sachin Krishnan, Ryuichi Okamoto, and *Shigeyuki Komura,
Relaxation dynamics of a compressible bilayer vesicle containing highly viscous fluid,
Physical Review E 94, 062414/1-14 (2016).

Masa Tsuchiya, Alessandro Giuliani, Midori Hashimoto, Jekaterina Erenpreisa and *Kenichi Yoshikawa,
Self-Organizing Global Gene Expression Regulated through Criticality: Mechanism of the Cell-Fate Change,
Plos One, 1-47 (2016).

Akira Muramatsu, Yuta Shimizu, Yuko Yoshikawa, Wakao Fukuda, Naoki Umezawa, Yuhei Horai, Tsunehiko Higuchi, Shinsuke Fujiwara, Tadayuki Imanaka and *Kenichi Yoshikawa,
Naturally occurring branched-chain polyamines induce a crosslinked meshwork structure in a giant DNA,
The Journal of Chemical Physics 145, 235103/1-7 (2016).

*Takumi Ito, Tomohiro Otsuka, Shinichi Amaha, Matthieu R. Delbecq, Takashi Nakajima, Jun Yoneda, Kenta Takeda, Giles Allison, Akito Noiri, Kento Kawasaki, and Seigo Tarucha,
Detection and control of charge states in a quintuple quantum dot,
Scientific Reports 6, 39113 (2016).

*Hayato Shiba, Yasunori Yamada, Takeshi Kawasaki, and Kang Kim,
Unveiling Dimensionality Dependence of Glassy Dynamics: 2D Infinite Fluctuation Eclipses Inherent Structural Relaxation,
Physical Review Letters 117, 245701/1-6 (2016).

*Takahiro Sakaue,
Dynamics of polymer translocation: a short review with an introduction of weakly-driven regime,
Polymers 8, 424:1-12 (2016).

Dai Akita, Itsuki Kunita, Mark D Fricker, Shigeru Kuroda, Katsuhiko Sato and *Toshiyuki Nakagaki,
Experimental models for Murray’s law,
Journal of Physics D: Applied Physics 50, 024001 (2016).

*Harukuni Ikeda, Kunimasa Miyazaki, and *Atsushi Ikeda,
A note on the replica liquid theory of binary mixtures,
Journal of Chemical Physics 145, 216101/1-2 (2016).

*Tatsuaki Tsuruyama, Takuya Hiratsuka, Wulamujiang Aini, Takuro Nakamura,
STAT5A modulates chemokine receptor CCR6 expression and enhances pre-B cell growth in a CCL20-dependent manner. J cellular biochemistry.,
J Cell Biochem 117, 2630-2642 (2016).

Yasuaki Morigaki, *Hirofumi Wada and *Yoshimi Tanaka,
Stretching an elastic loop: Crease, helicoid, and pop-out,
Physical Review Letters 117, 198003 (2016).

*Shumpei Yamamoto, Sosuke Ito, Naoto Shiraishi, and Takahiro Sagawa,
Linear irreversible thermodynamics and Onsager reciprocity for information-driven engines,
Phyical Review E 94, 052121/1-11 (2016).

*Yuichi Sawada, Fuyuki Nabeshima, Daisuke Asami, Ryo Ogawa, Yoshinori Imai,
Transport properties of FeSe_1-xTe_x thin films under magnetic fields up to 8 T,
Physica C 530, 27-30 (2016).

*Yoshinori Imai, Yuichi Sawada, Daisuke Asami, Fuyuki Nabeshima, Atsutaka Maeda,
Superconducting properties of FeSe_1-xTe_x films with x = 0－0.4,
Physica C 530, 24-26 (2016).

Koh M. Nakagawa and *Hiroshi Noguchi,
Nonuniqueness of local stress of three-body potentials in molecular simulations,
Physical Review E 94, 053304/1-11 (2016).

Daichi Suzuki, Shunri Oda and *Yukio Kawano,
A flexible and wearable terahertz scanner,
Nature Photonics 10, 809-814 (2016).

Yuji Sasaki, *V.S.R. Jampani, Chiharu Tanaka, Nobutaka Sakurai, Shin Sakane, Khoa V. Le, *Fumito Araoka, and *Hiroshi Orihara,
Large-scale self-organization of reconfigurable topological defect networks in nematic liquid crystals,
Nature Communications 7, 13238 (2016).

*Xiao-Fei Zhang, Wei Han, Hai-Feng Jiang, Wu-Ming Liu, Hiroki Saito, and Shou-Gang Zhang,
Topological defect formation in rotating binary dipolar Bose-Einstein condensate,
Annals of Physics 375, 368-377 (2016).

Daichi Matsumoto, Koji Fukudome and *Hirofumi Wada,
Two-dimensional fluid dynamics in a sharply bent channel: Laminar flow, separation bubble and vortex dynamics,
Physics of Fluids 28, 103608 (2016).

Naoto Shiraishi, Keiji Saito and Hal Tasaki,
Universal trade-off relation between power and efficiency for heat engines,
Physical Review Letters 117, 190601/1-5 (2016).

*Shunsuke F. Shimobayashi, Mafumi Hishida, Tomo Kurimura and Masatoshi Ichikawa,
Nanoscale hydration dynamics of DNA-lipid blend dry films: DNA-size dependency,
Physical Chemistry Chemical Physics 2016, 18, 31664-31669 (2016).

Takuma Akimoto, Eli Barkai, Keiji Saito,
Universal Fluctuations of Single-Particle Diffusivity in Quenched Environment,
Physical Review Letters 117, 180602 (2016).

Kano Suzuki, Kenji Mizutani, Shintaro Maruyama, Kazumi Shimono, Fabiana L. Imai, Eiro Muneyuki, Yoshimi Kakinuma, Yoshiko Ishizuka-Katsura, Mikako Shirouzu, Shigeyuki Yokoyama, Ichiro Yamato and *Takeshi Murata,
Crystal structures of the ATP-binding and ADP-release dwells of the V₁ rotary motor.,
Nature Communications 7, 13235 (2016).

Masaya Kato, Xiao-Fei Zhang, Daichi Sasaki, and Hiroki Saito,
Twisted spin vortices in a spin-1 Bose-Einstein condensate with Rashba spin-orbit coupling and dipole-dipole interaction,
Physical Review A 94, 043633/1-6 (2016).

Yuki Koyano, Tatsunari Sakurai, and *Hiroyuki Kitahata,
Oscillatory motion of a camphor grain in a one-dimensional finite region,
Physical Review E 94, 042215/1-8 (2016).

Hiroki Saito and Rina Kanamoto,
Self-rotation and synchronization in exciton-polariton condensates,
Physical Review B 94, 165306 (2016).

Ryoji Miyazaki, Takeshi Kawasaki, and *Kunimasa Miyazaki,
Cluster Glass Transition of Ultrasoft-Potential Fluids at High Density,
Physical Review Letterrs 117, 165701/1-5 (2016).

Akihiko Nakajima, Motohiko Ishida, Taihei Fujimori, Yuichi Wakamoto, *Satoshi Sawai,
The Microfluidic lighthouse: an omnidirectional gradient generator,
Lab on Chip 16(22), 4382-4394 (2016).

Daijyu Nakayama, Hajime Yoshino, Francesco Zamponi,
Protocol-dependent shear modulus of amorphous solids,
Journal of Statistical Mechanics: Theory and Experiment 10, 104001 (2016).

*Takayuki Narumi, Yosuke Mikami, Tomoyuki Nagaya, Hirotaka Okabe, Kazuhiro Hara, and Yoshiki Hidaka,
Relaxation with long-period oscillation in defect turbulence of planar nematic liquid crystals,
Physical Review E 94, 042701/1-6 (2016).

*Ichiro Tsukada, Ataru Ichinose, Fuyuki Nabeshima, Yoshinori Imai, Atsutaka Maeda,
Origin of lattice compression of FeS_1-xTe_x thin films on CaF₂ substrates.,
AIP Advances 6, 095314/1-7 (2016).

Hirofumi Wada,
Structural mechanics and helical geometry of thin elastic composites,
Soft Matter 12, 7386-7397 (2016).

Shunsuke Yabunaka, Natsuhiko Yoshinaga,
Collision between chemically-driven self-propelled drops,
Journal of Fluid Mechanics 809, 205-233 (2016).

Kazuya Eguchi, Doreen Niether, Simone Wiegand, and *Rio Kita,
Thermophoresis of cyclic oligosaccharides in polar solvents,
European Physical Journal E 39, 86/1-8 (2016).

*Wei Han, Xiao-Fei Zhang, Shu-Wei Song, Hiroki Saito, Wei Zhang, Wu-Ming Liu, and Shou-Gang Zhang,
Double-quantum spin vortices in SU(3) spin-orbit coupled Bose gases,
Physical Review A 94, 033611/1-9 (2016).

Jean Wolff, *Shigeyuki Komura, and David Andelman,
Budding transition of asymmetric two-component lipid domains,
Physical Review E 94, 032406/1-8 (2016).

Yoshimichi Teratani, Rui Sakano, Ryo Fujiwara, Tokuro Hata, Tomonori Arakawa, Meydi Ferrier, Kensuke Kobayashi and Akira Oguri,
Field-enhanced Kondo correlations in a half-filling nanotube dot: evolution of an SU(n) Fermi-liquid fixed point,
Journal of the Physical Society of Japan 85, 094718/1-18 (2016).

Taisuke Banno, Arisa Asami, Naoko Ueno, Hiroyuki Kitahata, Yuki Koyano, Kouichi Asakura, *Taro Toyota,
Deformable self-propelled micro-object comprising underwater oil droplets,
Scientific Reports 6, 31292 (2016).

Jerzy Górecki, Jonna N Gorecka, Bogdan Nowakowski, Hiroshi Ueno, Tatsuaki Tsuruyama and *Kenichi Yoshikawa,
Sensing Parameter of a Time Dependent Inflow with an Enzymatic Reaction,
Advances in Unconventional Computing 2, 85-104 (2016).

Elisa Herawati, Daisuke Taniguchi, Hatsuho Kanoh, Kazuhiro Tateishi, Shuji Ishihara, and Sachiko Tsukita,
Multiciliated cell basal bodies align in stereotypical patterns coordinated by the apical cytoskeleto,
The Journal of Cell Biology 214, 571–586 (2016).

Yoshiaki Kinosita, *Nariya Uchida, Daisuke Nakane and *Takayuki Nishizaka,
Direct observation of rotation and steps of the archaellum in the swimming halophilic archaeon Halobacterium salinarum,
Nature Microbiology 1, 16148/1-9 (2016).

Yoshiaki Kinosita, *Nariya Uchida, Daisuke Nakane, and *Takayuki Nishizaka,
Direct observation of rotation and steps of the archaellum in the swimming halophilic archaeon Halobacterium salinarum,
Nature Microbiology 1, 16148/1-9 (2016).

*Hiroshi Noguchi,
Construction of nuclear envelope shape by a high-genus vesicle with pore-size constraint,
Biophysical Journal 111, 824-831 (2016).

*Tomohiro Otsuka, Takashi Nakajima, Matthieu R. Delbecq, Shinichi Amaha, Jun Yoneda, Kenta Takeda, Giles Allison, Takumi Ito, Retsu Sugawara, Akito Noiri, Arne Ludwig, Andreas D. Wieck, and Seigo Tarucha,
Single-electron Spin Resonance in a Quadruple Quantum Dot,
Scientific Reports 6, 31820 (2016).

Yuki Koyano, Hiroyuki Kitahata, *Alexander S. Mikhailov,
Hydrodynamic collective effects of active proteins in biological membranes,
Physical Review E 94, 022416/1-11 (2016).

Koutaro Nakagome, Katsuhiko Sato, Seine A. Shintani, *Shin’ichi Ishiwata,
Model simulation of the SPOC wave in a bundle of striated myofibrils,
Biophysics and Physicobiology 13, 217-226 (2016).

*Yuko Sato, Tomoya Kujirai, Ritsuko Arai, Haruhiko Asakawa, Chizuru Ohtsuki, Naoki Horikoshi, Kazuo Yamagata, Jun Ueda, Takahiro Nagase, Tokuko Haraguchi, Yasushi Hiraoka, Akatsuki Kimura, Hitoshi Kurumizaka, and *Hiroshi Kimura,
A genetically encoded probe for live-cell imaging of H4K20 monomethylation.,
Journal of Molecular Biology 428, 3885-2902 (2016).

*Kenta Takeda, Jun Kamioka, Tomohiro Otsuka, Jun Yoneda, Takashi Nakajima, Matthieu R. Delbecq, Shinichi Amaha, Giles Allison, Tetsuo Kodera, Shunri Oda, and Seigo Tarucha,
A fault-tolerant addressable spin qubit in a natural silicon quantum dot,
Science Advances 2, e1600694 (2016).

Yoshiyuki Chiba and *Naoko Nakagawa,
Numerical determination of entropy associated with excess heat in steady-state thermodynamics,
Physical Review E 94, 022115/1-10 (2016).

Shou-Wen Wang, Kyogo Kawaguchi, Shin-ichi Sasa, and Lei-Han Tang,
Entropy Production of Nanosystems with Time Scale Separation,
Physical Review Letters 117, 070601/1-070601-5 (2016).

Xiangying Deng, Shunri Oda, and *Yukio Kawano,
Frequency Selective, High Transmission Spiral Terahertz Plasmonic Antennas,
Journal of Modeling and Simulation of Antennas and Propagation​​ 2, 1-6 (2016).

Taisuke Banno, Arisa Asami, Naoko Ueno, Hiroyuki Kitahata, Yuki Koyano, Kouichi Asakura, *Taro Toyota,
Deformable self-propelled micro-object comprising underwater oil droplets,
Scientific Reports 6, 31292/1-9 (2016).

*Satoshi Nakata, Hiroya Yamamoto, Yuki Koyano, Osamu Yamanaka, Yutaka Sumino, Nobuhiko J. Suematsu, Hiroyuki Kitahata, Paulina Skrobanska, and Jerzy Gorecki,
Selection of the Rotation Direction for a Camphor Disk Resulting from Chiral Asymmetry of a Water Chamber,
Journal of Physical Chemistry B 120, 9166-9172 (2016).

Takayuki Torisawa, Daisuke Taniguchi, Shuji Ishihara, Kazuhiro Oiwa,
Spontaneous Formation of a Globally Connected Contractile Network in a Microtubule-Motor System,
Biophysical Journal 111, 373–385 (2016).

Yuta Tamura and *Yasuyuki Kimura,
Two-dimensional assemblies of nematic colloids in homeotropic cells and their response to electric fields,
Soft Matter 12, 6817-6826 (2016).

Ritsuya Niwayama, Hiromichi Nagao, Tomoya Kitajima, Lars Hufnagel, Kyosuke Shinohara, Tomoyuki Higuchi, Takuji Ishikawa, and *Akatsuki Kimura,
Bayesian Inference of Forces Causing Cytoplasmic Streaming in Caenorhabditis elegans Embryos and Mouse Oocytes.,
PLoS ONE 11, e0159917 (2016).

*Kazumasa A. Takeuchi and Takuma Akimoto,
Characteristic Sign Renewals of Kardar-Parisi-Zhang Fluctuations,
Journal of Statistical Physics 164, 1167-1182 (2016).

Tomo Kurimura, Seori Mori, Masako Miki and *Kenichi Yoshikawa,
Rotary motion of a micro-solid particle under a stationary difference of electric potential,
The Journal of Chemical Physics 145, 034902/1-4 (2016).

Irwin Zaid and *Daisuke Mizuno,
Analytical Limit Distributions from Random Power-Law Interactions,
Physical Review Letters 117, 030602 (2016).

*Yujiro Eto, Masahiro Takahashi, Masaya Kunimi, Hiroki Saito, and Takuya Hirano,
Nonequilibrium dynamics induced by miscible-immiscible transition in binary Bose-Einstein condensates,
New Journal of Physics 17, 0703029/1-6 (2016).

Johannes Stigloher, Martin Decker, Helmut S. Körner, Kenji Tanabe, Takahiro Moriyama, Takuya Taniguchi, Hiroshi Hata, Marco Madami, Gianluca Gubbiotti, Kensuke Kobayashi, Teruo Ono, and Christian H. Back,
Snell’s Law for Spin Waves,
Physical Review Letters 117, 037204/1-4 (2016).

*Xiong Ding, Hugues Chate, Predrag Cvitanovic, Evangelos Siminos, and Kazumasa A. Takeuchi,
Estimating the Dimension of an Inertial Manifold from Unstable Periodic Orbits,
Physical Review Letters 117, 024101/1-5 (2016).

Soutaro Oda, Yoshitsugu Kubo, Chwen-Yang Shew and *Kenichi Yoshikawa,
Fluctuations induced transition of localization of granular objects caused by degrees of crowding,
Physica D 336, 39-46 (2016).

Misaki Ozawa, Kang Kim, *Kunimasa Miyazaki,
Tuning Pairwise Potential Can Control the Fragility of Glass-Forming Liquids: From Tetrahedral Network to Isotropic Soft Sphere Models,
Journal of Statistical Mechanics: Theory and Experiment None, 074002/1-21 (2016).

*Hideyuki Takahashi, Yoshinori Imai, Atsutaka Maeda,
Low-temperature-compatible tunneling-current-assisted scanning microwave microscope utilizing a rigid coaxial resonator,
Review of Scientific Instruments 87, 063706/1-6 (2016).

Keiji Saito and Abhishek Dhar,
Waiting for rare entropic fluctuations,
Europhys Letters 114, 50004/1-6 (2016).

Fumihito Fukujin, Akihiko Nakajima, Nao Shimada, *Satoshi Sawai,
Self-organization of chemoattractant waves in Dictyostelium depends on F-actin and cell–substrate adhesion,
Journal of The Royal Society Interface 13(119), 20160233 (2016).

Akihiro Tanaka, Daisuke Nakane, Masaki Mizutani, Takayuki Nishizaka, *Makoto Miyata,
Directed binding of gliding bacterium, Mycoplasma mobile, shown by detachment force and bond lifetime,
mBio 7, e00455-16 (2016).

Jerzy Górecki, Jonna N. Gorecka, Bogdan Nowakowski, Hiroshi Ueno and *Kenichi Yoshikawa,
How many enzyme molecules are needed for discrimination oriented applications?,
Physical Chemistry Chemical Physics 18, 20518-20527 (2016).

Takuya Hiratsuka, Yuji Takei, Rei Ohmori, Yuuki Imai, Makoto Ozeki, Keiji Tamaki, Hironori Haga, Takashi Nakamura, *Tatsuaki Tsuruyama,
ZFP521 contributes to pre-B-cell lymphomagenesis through modulation of the pre-B-cell receptor signaling pathway,
Oncogene 35, 3227-3238 (2016).

Kaito Sasaki, Yurika Matsui, Masahiko Miyara, Rio Kita, Naoki Shinyashiki, and Shin Yagihara,
Glass transition and dynamics of the polymer and water in the poly(vinylpyrrolidone)−ｗater ｍixtures studied by dielectricrelaxation spectroscopy,
Journal of Physical Chemistry B 120, 6882-6889 (2016).

*Shigeru Matsumura, Tomoko Kojidani, Yuji Kamioka, Seiichi Uchida, Tokuko Haraguchi, Akatsuki Kimura, and Fumiko Toyoshima,
Interphase adhesion geometry is transmitted to an internal regulator for spindle orientation via caveolin-1.,
Nature Communications 7, 11858 (2016).

*Tomoyuki Nagaya, Yuki Satou, Yoshitomo Goto, Yoshiki Hidaka, and Hiroshi Orihara,
Viscosity of Liquid Crystal Mixtures in the Presence of Electroconvection,
Journal of the Physical Society of Japan 85, 074002/1-4 (2016).

*Yuichi Sawada, Fuyuki Nabeshima, Yoshinori Imai, Atsutaka Maeda,
Investigation of Transport Properties for FeSe_1-xTe_x Thin Films under Magnetic Fields.,
Journal of the Physical Society of Japan 85, 073703/1-4 (2016).

*Shinichi Ikawa, and Makoto Tsubota,
Coflow turbulence of superfluid ⁴He in a square channel: Vortices trapped on a cylindrical attractor,
Physical Review B 93, 184508/1-8 (2016).

Chika Tongu, Takahiro Kenmotsu, Yuko Yoshikawa, Anatoly A. Zinchenko, Ning Chen and *Kenichi Yoshikawa,
Divalent Cation Shrinks DNA but Inhibits its Compaction with Trivalent Cation,
The Journal of Chemical Physics 144, 205101/1-7 (2016).

Hiroki Sakuta, Nobuyuki Magome, Yoshihito Mori and *Kenichi Yoshikawa,
Negative/Positive Chemotaxis of a Droplet: Dynamic Response to a Stimulant Gas,
Applied Physics Letters 108, 203703/1-4 (2016).

*J.-B. Delfau, John J. Molina and M. Sano,
Collective behavior of strongly confined suspensions of squirmers,
Europhysics Letters 114, 24001/1-5 (2016).

Kento Yasuda, *Shigeyuki Komura, and Ryuichi Okamoto,
Dynamics of a membrane interacting with an active wall,
Physical Review E 93, 052407/1-12 (2016).

*Ryuichi Okamoto, Naofumi Shimokawa, and Shigeyuki Komura,
Nano-domain formation in charged membranes: Beyond the Debye-Huckel approximation,
EPL 114, 28002/1-6 (2016).

Shu Hashimoto, Aoi Yoshida, Taeko Ohta, Hiroaki Taniguchi, Koichiro Sadakane and *Kenichi Yoshikawa,
Formation of Stable Cell-Cell Contact without a Solid/Gel Scaffold: Non-invasive Manipulation by Laser under Depletion Interaction with a Polymer,
Chemical Physics Letters 655-656, 11-16 (2016).

*Mitsuhiro Sugawa, Kei-ichi Okazaki, Masaru Kobayashi, Takashi Matsui, Gerhard Hummer, Tomoko Masaike, and *Takayuki Nishizaka,
F₁-ATPase conformational cycle from simultaneous single-molecule FRET and rotation measurements,
Proceedings of the National Academy of Sciences of the United States of America 113, E2916-2924 (2016).

Hironobu Nogucci and Shuji Ishihara,
Collective dynamics of active filament complexes,
Physical Review E 93, 052406/1-10 (2016).

*Hiroshi Noguchi,
Shape deformation of lipid membranes by banana-shaped protein rods: Comparison with isotropic inclusions and membrane rupture,
Physical Review E 93, 052404/1-10 (2016).

Tatsuya Muro, Yoshitaka Nishihara, Shota Norimoto, Meydi Ferrier, Tomonori Arakawa, *Kensuke Kobayashi, Thomas Ihn, Clemens Rösler, Klaus Ensslin, Christian Reichl, and Werner Wegscheider,
Finite shot noise and electron heating at quantized conductance in high-mobility quantum point contacts,
Physical Review B 93, 195411/1-7 (2016).

Yui Matsuda, Nobuhiko J. Suematsu, Hiroyuki Kitahata, Yumihiko S.Ikura, and *Satoshi Nakata,
Acceleration or deeleration of self-motion by the Marangoni effect,
Chemical Physics Letters 654, 92-96 (2016).

*Ryuichi Okamoto, Yuichi Kanemori, Shigeyuki Komura, and Jean-Baptiste Fournier,
Relaxation dynamics of two-component fluid bilayer membranes,
The European Physical Journal E 39, 52/1-21 (2016).

Yi-Teng Hsiao, Kuan-Ting Wu, Nariya Uchida, and *Wei-Yen Woon,
Impurity-tuned non-equilibrium phase transition in a bacterial carpet,
Applied Physics Letters 108, 183701/1-5 (2016).

Kyohei Shitara and *Takahiro Sakaue,
Shear modulus of structured electro-rheological fluid mixtures,
Physical Review E 93, 052603/1-7 (2016).

*Kentaro Suzuki, and Tadashi Sugawara,
Phototaxis of oil droplets comprising a caged fatty acid tightly linked to internal convection,
ChemPhysChem 17, 2300-2303 (2016).

*Naofumi Shimokawa, Hiroki Himeno, Tsutomu Hamada, Masahiro Takagi, Shigeyuki Komura, and David Andelman,
Phase diagrams and ordering in charged membranes: Binary mixtures of charged and neutral lipids,
The Journal of Physical Chemistry B 120, 6358-6367 (2016).

Chika Okimura. and Yoshiaki Iwadate,
Hybrid mechanosensing system to generate the polarity needed for migration in fish keratocytes,
Cell Adhesion & Migration 10, 406-418 (2016).

Hiroki Saito,
Path-integral Monte Carlo study on a droplet of a dipolar Bose-Einstein condensate stabilized by quantum fluctuation,
Journal of the Physical Society of Japan 85, 053001 (2016).

*Takahiro Sakaue, and Chihiro H. Nakajima,
Miscibility Phase Diagram of Ring Polymer Blends: A Topological Effect,
Physical Review E 93, 042502/1-9 (2016).

Itsuki Kunita, Tatsuya Yamaguchi, Atsushi Tero, Masakazu Akiyama, Shigeru Kuroda and *Toshiyuki Nakagaki,
A ciliate memorizes the geometry of a swimming arena,
The Royal Soc. Interface 13, 20160155/1-7 (2016).

Viktoria Frank, Stefan Kaufmann, Rebecca Wright, Patrick Horn, Hiroshi Yoshikawa, Patrick Wuchter, Jeppe Madsen, Andrew Lewis, Steven P. Armes, Anthony D. Ho, and *Motomu Tanaka,
Frequent mechanical stress suppresses proliferation of mesenchymal stem cells from human bone marrow without loss of multipotency,
Scientific Reports 6, 24264 (2016).

Takehiro Jimbo, Yuka Sakuma, Naohito Urakami, Primož Ziherl, and *Masayuki Imai,
Role of inverse-Cone-Shape Lipids in Temperature-Controlled Self-Reproduction of Binary Vesicles,
Biophysical Journal 110, 1551-1562 (2016).

Kaito Sasaki, Rio Kita, *Naoki Shinyashiki, and Shin Yagihara,
Dielectric relaxation time of ice-Ih with different preparation,
Journal of Physical Chemistry B 120, 3950-3953 (2016).

Shin-ichi Sasa, Yuki Yokokura,
Thermodynamic entropy as a Noether invariant,
Physical Review Letters 116, 140601/1-140601/6 (2016).

Tomo Kurimura and *Masatoshi Ichikawa,
Noise-supported actuator: Coherent resonance in the oscillations of a micrometersized object under a direct current-voltage,
Applied Physics Letters 108, 144101/1-4 (2016).

Daniele Coslovich, *Atsushi Ikeda, Kunimasa Miyazaki,
Mean-field dynamic criticality and geometric transition in the Gaussian core model,
Physical Review E 93, 042602/1-8 (2016).

*Takao Ohta, Mitsusuke Tarama and Masaki Sano,
Simple model of cell crawling,
Physica D 318, 3-11 (2016).

Shunsuke F. Shimobayashi, Masatoshi Ichikawa and *Takashi Taniguchi,
Direct observations of transition dynamics from macro- to micro-phase separation in asymmetric lipid bilayers induced by externally added glycolipids,
Europhysics Letters 113, Number 5, 56005-p1-p6 (2016).

*Aki Kutvonen, Takahiro Sagawa, and Tapio Ala-Nissila,
Thermodynamics of information exchange between two coupled quantum dots,
Phyical Review E 93, 032147/1-7 (2016).

Ayane Sonoda, Chika Okimura, and *Yoshiaki Iwadate,
Shape and area of keratocytes are related to the distribution and magnitude of their traction forces,
Cell Structure and Function 41(1), 33-43 (2016).

Takashi Mori, Tomotaka Kuwahara, Keiji Saito,
Rigorous bound on energy absorption and generic relaxation in periodically driven quantum systems,
Physical Review Letters 116, 120401/1-5 (2016).

Ken H. Nagai, Kunihito Tachibana, Yuta Tobe, Masaki Kazama, Hiroyuki Kitahata, Seiro Omata, *Masaharu Nagayama,
Mathematical model for self-propelled droplets driven by interfacial tension,
Journal of Chemical Physics 144, 114707/1-8 (2016).

Chika Okimura, Kazuki Ueda, Yuichi Sakumura, *Yoshiaki Iwadate,
Fast-crawling cell types migrate to avoid the direction of periodic substratum stretching,
Cell Adhesion & Migration 10, 331-341 (2016).

Mariam Veschgini, F. Gebert, Nyamdorj Khangai, H. Ito, Ryo Suzuki, Thomas W. Holstein, Yasushi Mae, Takero Arai, and *Motomu Tanaka,
Tracking mechanical and morphological dynamics of regenerating Hydra tissue fragments using a two fingered micro-robotic hand,
Applied Physics Letters 108, 103702 (2016).

*Kazuya Fujimoto, Makoto Tsubota,
Direct and inverse cascades of spin-wave turbulence in spin-1 ferromagnetic spinor Bose-Einstein condensates,
Physical Review A 93, 033620/1-10 (2016).

Shunpei Takeshita, Sadashige Matsuo, Takahiro Tanaka, Shu Nakaharai, Kazuhito Tsukagoshi, Takahiro Moriyama, Teruo Ono, Tomonori Arakawa, and Kensuke Kobayashi,
Anomalous behavior of 1/f noise in graphene near the charge neutrality point,
Applied Physics Letters 108, 103106/1-4 (2016).

*Yujiro Eto, Masahiro Takahashi, Keita Nabeta, Ryotaro Okada, Masaya Kunimi, Hiroki Saito, and Takuya Hirano,
Bouncing motion and penetration dynamics in multicomponent Bose-Einstein condensates,
Physical Review A 93, 033615/1-6 (2016).

Tomoya Kaneda and Hiroki Saito,
Collision dynamics of Skyrmions in a two-component Bose-Einsteincondensate,
Physical Review A 93, 033611/1-6 (2016).

*John J. Molina, Kotaro Otomura, Hayato Shiba, Hideki Kobayashi, Masaki Sano, and Ryoichi Yamamoto,
Rheological evaluation of colloidal dispersions using the smoothed profile method: formulation and applications,
Journal of Fluid Mechanics 792, 590-619 (2016).

*Yutaka Sumino, Norifumi L. Yamada, Michihiro Nagao, Takuya Honda, Hiroyuki Kitahata, Yuri B. Melnichenko, and Hideki Seto,
Mechanism of Spontaneous Blebbing Motion of an Oil−Water Interface: Elastic Stress Generated by a Lamellar−Lamellar Transition,
Langmuir 32, 2891-2899 (2016).

Ahmed Khorshid, Susan Amin, Zhiyue Zhang, Takahiro Sakaue, *Walter Reisner,
Non-Equilibrium Dynamics of Nanochannel Confined DNA,
Macromolecules 49(5), 1933–1940 (2016).

*Masaki Sano and Keiichi Tamai,
A Universal Transition to Turbulence in Channel Flow,
Nature Physics 12, 249-253 (2016).

Tomotaka Kuwahara, Takashi Mori, and Keiji Saito,
Floquet-Magnus Theory and Generic Transient Dynamics in Periodically Driven Many-Body Quantum Systems,
Annals of Physics, 96-124 (2016).

*Hiroshi Noguchi,
Membrane tubule formation by banana-shaped proteins with or without transient network structure,
Scientific Reports 6, 20935 (2016).

Christian Van den Broeck, Shin-ichi Sasa, Udo Seifert,
Focus on stochastic thermodynamics,
New Journal of Physics 18, 020401-020403 (2016).

*Jun Tamogami, Keitaro Sato, Sukuna Kurokawa, Takumi Yamada, Toshifumi Nara, Makoto Demura, Seiji Miyauchi, Takashi Kikukawa, Eiro Muneyuki, Naoki Kamo,
Formation of M-Like Intermediates in Proteorhodopsin in Alkali Solutions (pH ≧~8.5) Where the Proton Release Occurs First in Contrast to the Sequence at Lower pH,
Biochemistry 55(7), 1036-48 (2016).

Atsuji Kodama, Yuka Sakuma, *Masayuki Imai, Yutaka Oya, Toshihiro Kawakatsu, Nicolas Puff, and Miglena I. Angelova,
Migration of phospholipid vesicles in response to OH- stimuli,
Soft Matter 12, 2877-2886 (2016).

Kazuhisa Washio, Ryo Nakazawa, Masayuki Hashisaka, Koji Muraki, Y. Tokura, and Toshimasa Fujisawa,
Long-lived binary tunneling spectrum in the quantum Hall Tomonaga-Luttinger liquid,
Physical Review B 93, 075304 (2016).

*Kazuya Saito, Yasuhisa Yamamura, Yohei Miwa, and Shoichi Kutsumizu,
A structural model of the chiral Im3m cubic phase,
Physical Chemistry Chemical Physics 18, 3280-3284 (2016).

Mafumi Hishida, Ryuta Yanagisawa, Hatsuho Usuda, Yasuhisa Yamamura, and *Kazuya Saito,
Communication: Rigidification of a lipid bilayer by an incorporated n-alkane,
Journal of Chemical Physics 144, 041103 (2016).

*Yuji Hirokane, Yasuhide Tomioka, Yoshinori Imai, Atsutaka Maeda, Yoshinori Onose,
Longitudinal and transverse thermoelectric transport in MnSi,
Physical Review B 93, 014436/1-5 (2016).

*Kenji Tanabe, Ryo Matsumoto, Jun-Ichiro Ohe, Shuichi Murakami, Takahiro Moriyama, Daichi Chiba, Kensuke Kobayashi and Teruo Ono,
Observation of magnon Hall-like effect for sample-edge scattering in unsaturated YIG,
physica status solidi (b) 253, 783-787 (2016).

Hayato Shiba, Hiroshi Noguchi, and *Jean-Baptiste Fournier,
Monte Carlo study of the frame, fluctuation and internal tensions of fluctuating membranes with fixed area,
Soft Matter 12, 2373-2380 (2016).

Naoto Shiraishi, Takumi Matsumoto, and Takahiro Sagawa,
Measurement-feedback formalism meets information reservoirs,
New Journal of Physics 18, 013044/1-8 (2016).

Masanobu Horie, Tatsunari Sakurai, and *Hiroyuki Kitahata,
Experimental and theoretical approach for the clustering of globally coupled density oscillators based on phase response,
Physical Review E 93, 012212/1-9 (2016).

Haruka Sugiura, Manami Ito, Tomoya Okuaki, Yoshihito Mori, Hiroyuki Kitahata, and *Masahiro Takinoue,
Pulse-density modulation control of chemical oscillation far from equilibrium in a droplet open-reactor system,
Nature Communications 7, 10212/1-9 (2016).

Takako Nakata, Chika Okimura, Takafumi Mizuno, and *Yoshiaki Iwadate,
The role of stress fibers in the shape determination mechanism of fish keratocytes,
Biophysical Journal 110, 481-492 (2016).

Kui-Tian Xi and Hiroki Saito,
Droplet formation in a Bose-Einstein condensate with strong dipole-dipole interaction,
Physical Review A 93, 011604(R) (2016).

*Tokuro Hata, Tomonori Arakawa, Kensaku Chida, Sadashige Matsuo, and Kensuke Kobayashi,
Giant Fano factor and bistability in a Corbino disk in the quantum Hall effect breakdown regime,
Journal of Physics: Condensed Matter 28, 055801/1-7 (2016).

Yuki Oda, Koichiro Sadakane, Yuko Yoshikawa, Tadayuki Imanaka, Kingo Takiguchi, Masahito Hayashi, Takahiro Kenmotsu and *Kenichi Yoshikawa,
Highly Concentrated Ethanol Solution Behaves as a Good Solvent for DNA as Revealed by Single-Molecule Observation,
ChemPhysChem 17(4), 471-473 (2016).

Yukinori Nishigami, *Hiroaki Ito, Seiji Sonobe, and *Masatoshi Ichikawa,
Non-periodic oscillatory deformation of an actomyosin microdroplet encapsulated within a lipid interface,
Scientific Reports 6, 18964/1-11 (2016).

Yasutaka Ohnishi, Rio Kita, Kazuyoshi Tsuchiya and *Satoru Iwamori,
Optical characteristics of poly(tetrafluoroethylene) thin film prepared by a vacuum evaporation,
Japanese Journal of Applied Physics 55, 02BB04/1-5 (2016).

Yuta Tamura and *Yasuyuki Kimura,
Fabrication of ring assemblies of nematic colloids and their electric response,
Applied Physics Letters 108, 011903 (2016).

Shugo Yasuda and Ryoichi Yamamoto,
Synchronized molecular-dynamics simulation for the thermal lubrication of a polymeric liquid between parallel plates,
Computers & Fluids 124, 185 (2016).

---

2015

*Satoshi Yui, Kazuya Fujimoto, Makoto Tsubota ,
Logarithmic velocity profile of quantum turbulence of superfluid ⁴He,
Physical Review B 92, 224513/1-5 (2015).

Michiel Laleman, Marco Baiesi, Boris P. Belotserkovskii, Takahiro Sakaue, Jean-Charles Walter,and *Enrico Carlon,
Torque-Induced Rotational Dynamics in Polymers: Torsional Blobs and Thinning,
Macromolecules 49, 405-414 (2015).

Hiroki Himeno, Hiroaki Ito, Yuji Higuchi, Tsutomu Hamada, *Naofumi Shimokawa, Masahiro Takagi,
Coupling between pore formation and phase separation in charged lipid membranes,
Physical Review E 92, 62713 (2015).

Naoki Narematsu, Raymond Quek, *Keng‐Hwee Chiam, and *Yoshiaki Iwadate,
Ciliary metachronal wave propagation on the compliant surface of Paramecium cells,
Cytoskeleton 72, 633-646 (2015).

*Hiroshi Noguchi,
Shape transitions of high-genus fluid vesicles,
EPL 112, 58004/1-6 (2015).

*Hiroaki Ito, Yukinori Nishigami, Seiji Sonobe, and *Masatoshi Ichikawa,
Wrinkling of a spherical lipid interface induced by actomyosin cortex,
Physical Review E 92, 062711/1-8 (2015).

Boris Guirao, Stéphane Rigaud, Floris Bosveld, Anaïs Bailles, Jesus Lopez-Gay, Shuji Ishihara, Kaoru Sugimura, *François Graner, *Yohanns Bellaïche,
Unified quantitative characterization of epithelial tissue development,
eLIFE , 08519 (2015).

*Hiroyuki Kitahata, Rui Tanaka, Yuki Koyano, Satoshi Matsumoto, Katsuhiro Nishinari, Tadashi Watanabe,Koji Hasegawa, Tetsuya Kanagawa, Akiko Kaneko, and Yutaka Abe,
Oscillation of a rotating levitated droplet: Analysis with a mechanical model,
Physical Review E 92, 062904/1-8 (2015).

Alexei Borodin, Ivan Corwin, Leonid Petrov, Tomohiro Sasamoto,
Spectral theory for interacting particle systems solvable by coordinate Bethe ansatz,
Communications in Mathematical Physics 339(3), 1167-1245 (2015).

Wonju Lee, Yoshiaki Kinosita, Youngjin Oh, Nagisa Mikami, Heejin Yang, Makoto Miyata, Takayuki Nishizaka, and *Donghyun Kim,
Three-Dimensional Superlocalization Imaging of Gliding Mycoplasma mobile by Extraordinary Light Transmission through Arrayed Nanoholes,
ACS Nano 9, 10896-10908 (2015).

*Meydi Ferrier, Tomonori Arakawa, Tokuro Hata, Ryo Fujiwara, Raphaëlle Delagrange, Raphael Weil, Richard Deblock, Rui Sakano, Akira Oguri, and *Kensuke Kobayashi,
Universality of non-equilibrium fluctuations in strongly correlated quantum liquids,
Nature Physics 12, 230-235 (2015).

Thapakorn Tree-udom, Jiraporn Seemork, Kazuki Shigyou, Tsutomu Hamada, Naunpun Sangphech, Tanapat Palaga, Numpon Insin, Porntip Pan-In, and *Supason Pattanaargson Wanichwecharungruang ,
Shape Effect on Particle-Lipid Bilayer Membrane Association, Cellular Uptake and Cytotoxicity,
ACS Applied Materials & Interfaces 7, 23993–24000 (2015).

*Daiki Nishiguchi and Masaki Sano,
Mesoscopic turbulence and local order in Janus particles self-propelling under an ac electric field,
Physical Review E 92, 052309/1-11 (2015).

Takuma Hoshino, Shigeyuki Komura, and David Andelman,
Correlated lateral phase separations in stacks of lipid membranes,
Journal of Chemical Physics 143, 243124/1-9 (2015).

Tomohiro Yanao, Sosuke Sano and *Kenichi Yoshikawa,
Chiral selection in wrapping, crossover, and braiding of DNA mediated by asymmetric bend-writhe elasticity,
AIMS Biophysics 2(4), 666–694 (2015).

Hiroshi Ueno, Tatsuaki Tsuruyama, Bogdan Nowakowski, Jerzy Górecki, and *Kenichi Yoshikawa,
Discrimination of time-dependent inflow properties with a cooperative dynamical system.,
Chaos 25, 103115 (2015).

Masato Itami and Shin-ichi Sasa,
Derivation of Stokes’ Law from Kirkwood’s Formula and the Green-Kubo Formula via Large Deviation Theory,
Journal of Statistical Physics 161, 532-552 (2015).

Tatsuaki Tsuruyama, Wulamujiang Aini, Takuya Hiratsuka,
Reassessment of H&E-stained clot specimens and immunohistochemistry of phosphorylated Stat5 for histologic diagnosis of MDS/MPN.,
Pathology 47, 673-677 (2015).

Kristopher Erickson, Xiaowei He, A. Alec Talin, Bernice Mills, Robert H. Hauge, Takashi Iguchi, Naoki Fujimura, Yukio Kawano, *Junichiro Kono, *François Léonard,
Figure of Merit for Carbon Nanotube Photothermoelectric Detectors,
ACS Nano 9, 11618–11627 (2015).

Masanobu Tanaka, Marcel Hörning, *Hiroyuki Kitahata, and Kenichi Yoshikawa,
Elimination of a spiral wave pinned at an obstacle by a train of plane waves: Effect of diffusion between obstacles and surrounding media,
Chaos 25, 103127/1-9 (2015).

Masanobu Tanaka, Marcel Hörning, Hiroyuki Kitahata and *Kenichi Yoshikawa,
Elimination of a spiral wave pinned at an obstacle by a train of plane waves: Effect of diffusion between obstacles and surrounding media,
Chaos 25, 103127 (2015).

D. Imanaka, S. Sharmin, Masayuki Hashisaka, Koji Muraki, and *Toshimasa Fujisawa,
Exchange-induced spin blockade in a two-electron double quantum dot,
Physical Review Letters 115, 176802 (2015).

J. C. H. Chen, Y. Sato, R. Kosaka, Masayuki Hashisaka, Koji Muraki, and Toshimasa Fujisawa,
Enhanced electron-phonon coupling for a semiconductor charge qubit in a surface phonon cavity,
Scientific Reports 5, 15176 (2015).

Harukuni Ikeda, *Kunimasa Miyazaki,
Facilitated spin model on Bethe lattice with random pinning,
EPL 112, 16001 (2015).

*Shigeyuki Komura, Kento Yasuda, and Ryuichi Okamoto,
Dynamics of two-component membranes surrounded by viscoelastic media,
Journal of Physics: Condensed Matter 27, 432001/1-7 (2015).

*Hiroki Saito,
Can we swim in superfluids?: Numerical demonstration of self-propulsion in a Bose-Einstein condensate,
Journal of the Physical Society of Japan 84, 114001/1-6 (2015).

Naoaki Hiyama, *Masayuki Hashisaka, and Toshimasa Fujisawa,
An edge magnetoplasmon Mach-Zehnder interferometer,
Applied Physics Letters 107, 143101 (2015).

*Takahiro Hatano,
Friction laws from dimensional-analysis point of view.,
Geophysical Journal International 202, 2159-2162 (2015).

*Hiroshi Noguchi,
Formation of polyhedral vesicles and polygonal membrane tubes induced by banana-shaped proteins,
Journal of Chemical Physics 143, 243109/1-7 (2015).

Kensuke Kurihara, Yusaku Okura, Muneyuki Matsuo, Taro Toyota, Kentaro Suzuki, and *Tadashi Sugawara,
A recursive vesicle-based model protocell with a primitive model cell cycle,
Nature Communications 6, 8352 (2015).

Kousaku Maeda, Naoki Shinyashiki, Shin Yagihara, Simone Wiegand, and *Rio Kita,
Ludwig-Soret effect of aqueous solutions of ethylene glycol oligomers, crown ethers, and glycerol: Temperature, molecular weight, and hydrogen bond effect,
Journal of Chemical Physics 143, 124504/1-7 (2015).

*Shigeru Kuroda, Seiji Takagi, Toshiyuki Nakagaki and Tetsuo Ueda,
Allometry in Physarum plasmodium during free locomotion: size versus shape, speed and rhythm,
Journal of Experimental Biology 218, 3729-3738 (2015).

*Shoichi Toyabe, Masaki Sano,
Nonequilibrium Fluctuations in Biological Strands, Machines, and Cells,
Journal of the Physical Society of Japan 84, 102001/1-17 (2015).

*Yoshiki Hidaka, Megumi Hashiguchi, Noriko Oikawa, Shoichi Kai,
Lagrangian chaos and particle diffusion in electroconvection of planar nematic liquid crystals,
Physical Review E 92, 032909/1-6 (2015).

Shingo Miyazaki, Tatsunari Sakurai, and *Hiroyuki Kitahata,
Coupling between a chemical wave and motion in a Belousov-Zhabotinsky droplet,
Current Physical Chemistry 5, 82-90 (2015).

Shogo Okubo, Shuhei Shibata, Yuriko Sasa Kawamura, Masatoshi Ichikawa and *Yasuyuki Kimura,
Dynamic clustering of driven colloidal particles on a circular path,
Physical Review E 92, 032303 (2015).

Shogo Okubo, Shuhei Shibata, Yuriko Sasa Kawamura, Masatoshi Ichikawa and *Yasuyuki Kimura,
Dynamic clustering of driven colloidal particles on a circular path,
Physical Review E 92, 032303 (2015).

*Sadashige Matsuo, Shunpei Takeshita, Takahiro Tanaka, Shu Nakaharai, Kazuhito Tsukagoshi, Takahiro Moriyama, Teruo Ono, Kensuke Kobayashi,
Edge mixing dynamics in graphene p–n junctions in the quantum Hall regime,
Nature Communications 6, 8066/1-6 (2015).

Naohito Urakami, Akio Takai, Masayuki Imai and Takashi Yamamoto,
Molecular dynamics simulation for shape change of water-in-oil droplets,
Molecular Simulation 41, 986-992 (2015).

*Kazuya Saito, Mafumi Hishida, and Yasuhisa Yamamura,
A Possible Critical Point for Nematic Order on the Basis of Landau Free Energy Having Dual Instabilities for Nano-Segregated Smectic Liquid Crystal”,
Soft Matter 11, 8493-8498 (2015).

Yue Ma, Naoki Ogawa, Yuko Yoshikawa, Toshiaki Mori, Tadayuki Imanaka, Yoshiaki Watanabe and *Kenichi Yoshikawa,
Protective Effect of Ascorbic Acid against Double-strand Breaks in Giant DNA: Marked Differences among the Damage Induced by Photo-irradiation, Gamma-rays and Ultrasound,
Chemical Physics Letters 638, 205-209 (2015).

Tomohiro Sasamoto, Herbert Spohn,
Point-interacting Brownian motions in the KPZ universality class,
Electronic Journal of Probability 20, 1-28 (2015).

Yongjun Chen, Kosuke Suzuki and *Kenichi Yoshikawa,
Self-organized Target and Spiral Patterns through the “Coffee Ring” Effect,
Journal of Chemical Physics 143, 084702 (2015).

Hitomi Nakashima, Chika Okimura, and *Yoshiaki Iwadate,
The molecular dynamics of crawling migration in microtubule-disrupted keratocytes,
Biophysics and Physicobiology 12, 21-29 (2015).

Masahiko Ueda and Shin-ichi Sasa,
Replica symmetry breaking in trajectories of a driven Brownian particle,
Physical Review Letters 115, 080605/1-5 (2015).

Kay Brandner, Keiji Saito, and Udo Seifert ,
Thermodynamics of Micro- and Nano-Systems Driven by Periodic Temperature Variations,
Physical Review X 5, 031019 (2015).

Misaki Ozawa, *Walter Kob, Atsushi Ikeda, Kunimasa Miyazaki,
Reply to Chakrabarty et al.: Particles move even in ideal glasses,
Proceedings of the National Academy of Sciences of the United States of America 112, E4821-E4822 (2015).

*Yutetsu Kuruma and Takuya Ueda,
The PURE system for the cell-free synthesis of membrane proteins,
Nature Protocols 10, 1328-1344 (2015).

*Yasuaki Kobayashi, Hiroyuki Kitahata, and Masaharu Nagayama,
Model for calcium-mediated reduction of structural fluctuations in epidermis,
Physical Review E 92, 022709/1-7 (2015).

*Aya Tanaka, Ryosuke Tanaka, Nahoko Kasai, Shingo Tsukada, Takaharu Okajima, Koji Sumitomo,
Time-lapse imaging of morphological changes in a single neuron during the early stages of apoptosis using scanning ion conductance microscopy,
Journal of Structural Biology 191, 32–38 (2015).

S. K. Kundu, S. Choe, K. Sasaki, Rio Kita, N. Shinyashiki, and *S. Yagihara,
Relaxation dynamics of liposomes in an aqueous solution,
Physical Chemistry Chemical Physics 17, 18449-18455 (2015).

Toshiyuki Hosoya, Martin Miranda, Ryotaro Inoue and *Mikio Kozuma,
Injection locking of a high power ultraviolet laser diode for laser cooling of ytterbium atoms,
Review of Scientific Instruments 86, 073110/1-4 (2015).

Misato Iino, *Yoshiki Hidaka, Fahrudin Nugroho, Rinto Anugraha, Hirotaka Okabe, Kazuhiro Hara,
Responses of spatiotemporal chaos to oscillating forces,
Physical Review E 92, 012916/1-5 (2015).

Takahiro Hatano, Clément Narteau and Peter Shebalin,
Common dependence on stress for the statistics of granular avalanches and earthquakes,
Scientific Reports 5, 12280 (2015).

Naoki Umezawa, Yuhei Horai, Yuki Imamura, Makoto Kawakubo, Mariko Nakahira, Nobuki Kato, Akira Muramatsu, Yuko Yoshikawa, *Kenichi Yoshikawa and Tsunehiko Higuchi,
Structurally Diverse Polyamines: Solid-Phase Synthesis and Interaction with DNA,
ChemBioChem 16, 1811-1819 (2015).

Xiaojun Ma, Tomohiro Aoki, Tatsuaki Tsuruyama, and Shuh Narumiya,
Definition of prostaglandin E2-EP2 signals in the colon tumor microenvironment which amplify inflammation and tumor growth.,
Cancer Reserach 75, 2822-32 (2015).

Hisako Takigawa-Imamura, Ritsuko Morita, Takafumi Iwaki, Takashi Tsuji and *Kenichi Yoshikawa,
Tooth germ invagination from cell–cell interaction: Working hypothesis on mechanical instability,
Journal of Theoretical Biology 382, 284 (2015).

*Yujiro Eto, Masaya Kunimi,Hidekatsu Tokita,Hiroki Saito, and Takuya Hirano,
Suppression of relative flow by multiple domains in two component Bose-Einstein condensates,
Physical Review A 92, 013611/1-5 (2015).

Péter Ván, Noa Mitsui, Takahiro Hatano,
Non-equilibrium thermodynamical framework for rate- and state-dependent friction,
Periodica Polytechnica Civil Engineering 59, 583-589 (2015).

Yuki Koyano, Natsuhiko Yoshinaga, and *Hiroyuki Kitahata,
General criteria for determining rotation or oscillation in a two-dimensional axisymmetric system,
Journal of Chemical Physics 143, 014117/1-6 (2015).

Daigo Yamamoto, Tsuyoshi Takada, Masashi Tachibana, Yuta Iijima, Akihisa Shioi and Kenichi Yoshikawa,
Micromotors working in water through artificialaerobic metabolism,
Nanoscale 7, 13186–13190 (2015).

Yuki Koyano, Natsuhiko Yoshinaga, and *Hiroyuki Kitahata,
General criteria for determining rotation or oscillation in a two-dimensional axisymmetric system,
Journal of Chemical Physics 143, 014117/1-6 (2015).

*Takuya Saito, *Takahiro Sakaue,
Driven anomalous diffusion: An example from polymer stretching,
Physical Review E 92, 012601/1-13 (2015).

Ryosuke Takahashi, *Takaharu Okajima,
Mapping power-law rheology of living cells using multi-frequency force modulation atomic force microscopy,
Applied Physics Letters 107, 173702 (2015).

Keita Ikari, Yuka Sakuma, Takehiro Jimbo, Atsuji Kodama, *Masayuki Imai, Pierre-Alain Monnard, and Steen Rasmussen,
Dynamics of fatty acid vesicles in response to pH stimuli,
Soft Matter 11, 6327-6334 (2015).

Tomohiro Sasaki, Nobuhiko J. Suematsu, Tatsunari Sakurai, and *Hiroyuki Kitahata,
Spontaneous recurrence of deposition and dissolution of a solid layer on a solution surface,
Journal of Physical Chemistry B 119, 9970-9974 (2015).

Teruhisa S. Komatsu, Naoko Nakagawa, Shin-ichi Sasa, and Hal Tasaki,
Exact equalities and thermodynamic relations for nonequilibrium steady states,
Journal of Statistical Physics 159, 1237-1285 (2015).

*Sadashige Matsuo, Shu Nakaharai, Katsuyoshi Komatsu, Kazuhito Tsukagoshi, Takahiro Moriyama, Teruo Ono, and Kensuke Kobayashi,
Parity effect of bipolar quantum Hall edge transport around graphene antidots,
Scientific Reports 5, 11723/1-7 (2015).

Chunyu Shih, John J. Molina, and Ryoichi Yamamoto,
Dynamic polarisation of a charged colloid in an oscillating electric field,
Molecular Physics 113, 2511 (2015).

*Tsutomu Hamada, Rie Fujimoto, Shunsuke F. Shimobayashi, Masatoshi Ichikawa, *Masahiro Takagi,
Molecular behavior of DNA in a cell-sized compartment coated by lipids,
Physical Review E 91, 62717 (2015).

*Tsutomu Hamada, Rie Fujimoto, Shunsuke F. Shimobayashi, Masatoshi Ichikawa, *Masahiro Takagi,
Molecular behavior of DNA in a cell-sized compartment coated by lipids,
Physical Review E 91, 62717 (2015).

C. Patrick Royall, Jens Eggers, *Akira Furukawa, and Hajime Tanaka,
Probing colloidal gels at multiple length scales: The role of hydrodynamics,
Physical Review Letters 114, 258302 (2015).

*Sosuke Ito, Takahiro Sagawa,
Maxwell’s demon in biochemical signal transduction with feedback loop,
Nature Communications 6, 7498 (2015).

Martin Miranda, Ryotaro Inoue, Yuki Okuyama, Akimasa Nakamoto, and *Mikio Kozuma,
Site-resolved imaging of ytterbium atoms in a two-dimensional optical lattice,
Physical Review A 91, 063414/1-6 (2015).

Masa Tsuchiya, Alessandro Giuliani, Midori Hashimoto, Jekaterina Erenpreisa and Kenichi Yoshikawa,
Emergent Self-Organized Criticality in Gene Expression Dynamics: Temporal Development of Global Phase Transition Revealed in a Cancer Cell Line,
PLOS ONE 10(6), e0128565 (2015).

Kazuhiro Kishi, Masashi Kawaguchi, Hitoshi Miura, *Masahide Sato and Makio Uwaha,
Relation between the Step Pattern and the Velocity of the Moving Linear Adatom Source,
e-Journal of Surface Science and Nanotechnology 13, 269-274 (2015).

Kiyoshi Kanazawa, Tomohiko G. Sano, Takahiro Sagawa, and Hisao Hayakawa,
Asymptotic Derivation of Langevin-like Equation with Non-Gaussian Noise and Its Analytical Solution,
Journal of Statistical Physics 160, 1294-1335 (2015).

*Timothy Halpin-Healy, Kazumasa A. Takeuchi,
A KPZ Cocktail: Shaken, not stirred… -Toasting 30 years of kinetically roughened surfaces,
Journal of Statistical Physics 160, 794-814 (2015).

Misaki Ozawa, *Walter Kob, Atsushi Ikeda, and Kunimasa Miyazaki,
Equilibrium phase diagram of a randomly pinned glass-former,
Proceedings of the National Academy of Sciences of the United States of America 112, 6914-6919 (2015).

Gregory Lecrivain, Giacomo Petrucci, *Uwe Hampel and Ryoichi Yamamoto,
Attachment of solid elongated particles on the surface of a stationary gas bubble,
International Journal of Multiphase Flow 71, 83-93 (2015).

*Taiki Haga,
Nonequilibrium Langevin equation and effective temperature for particle interacting with spatially extended environment,
Journal of Statistical Physics 159, 713-729 (2015).

Hiroaki Ito, Navina Kuss, Bastian E. Rapp, Masatoshi Ichikawa, Thomas Gutsmann, Klaus Brandenburg, Johannes M. B. Pöschl, and *Motomu Tanaka,
Quantification of the Influence of Endotoxins on the Mechanics of Adult and Neonatal Red Blood Cells,
Journal of Physical Chemistry B 119, 7837−7845 (2015).

Hiroaki Ito, Navina Kuss, Bastian E. Rapp, Masatoshi Ichikawa, Thomas Gutsmann, Klaus Brandenburg, Johannes M. B. Pöschl, and *Motomu Tanaka,
Quantification of the Influence of Endotoxins on the Mechanics of Adult and Neonatal Red Blood Cells,
Journal of Physical Chemistry B 119, 7837−7845 (2015).

Daigo Yamamoto, Chika Nakajima, Akihisa Shioi, Marie Pierre Krafft, Kenichi Yoshikawa ,
The evolution of spatial ordering of oil drops fast spreading on a water surface,
Nature Communications 6, 7189/1-6 (2015).

*Kazuya Fujimoto and Makoto Tsubota,
Bogoliubov-wave turbulence in Bose-Einstein condensates,
Physical Review A 91, 053620/1-12 (2015).

Yongjun Chen, Shun N. Watanabe and *Kenichi Yoshikawa,
Roughening Dynamics of Radial Imbibition in a Porous Medium,
Journal of Physical Chemistry C 199(22), 12508–12513 (2015).

*Kazue Kudo and Yuki Kawaguchi,
Coarsening dynamics driven by vortex-antivortex annihilation in ferromagnetic Bose-Einstein condensates,
Physical Review A 91, 053609/1-8 (2015).

Yoshitsugu Kubo, *Shio Inagaki, *Masatoshi Ichikawa, and Kenichi Yoshikawa,
Mode bifurcation of a bouncing dumbbell with chirality,
Physical Review E 91, 052905/1-9 (2015).

*Satoshi Yui and Makoto Tsubota,
Counterflow quantum turbulence of He-II in a square channel: numerical analysis with nonuniform flows of the normal fluid,
Physical Review B 91, 184504/1-12 (2015).

Mafumi Hishida, Asami Endo, Koyomi Nakazawa, Yasuhisa Yamamura, and *Kazuya Saito ,
Effect of n-alkanes on lipid bilayers depending on headgroups,
Chemistry and Physics of Lipids 188, 61-67 (2015).

*Daisuke Takahashi, Michikazu Kobayashi, and Muneto Nitta,
Nambu-Goldstone Modes Propagating along Topological Defects: Kelvin and Ripple Modes from Small to Large Systems,
Physical Review B 91, 184501-1-19 (2015).

*Shin-ichi Sasa,
Collective dynamics from stochastic thermodynamics,
New Journal of Physics 17, 045024/1-14 (2015).

Jaka Fajar Fatriansyah and *Hiroshi Orihara,
Electric-field-induced flow-aligning state in a nematic liquid crystal,
Physical Review E 91, 042508/1-7 (2015).

Ken H. Nagai, Yutaka Sumino, Raul Montagne, Igor S. Aranson, and *Hugues Chaté,
Collective motion of self-propelled particles with memory,
Physical Review Letters 114, 168001/1-6 (2015).

*Naoto Shiraishi, Sosuke Ito, Kyogo Kawaguchi, and Takahiro Sagawa,
Role of measurement-feedback separation in autonomous Maxwell’s demons,
New Journal of Physics 17, 045012/1-11 (2015).

*Hiroki Saito and Masaya Kunimi,
Energy shift of magnons in a ferromagnetic spinor-dipolar Bose-Einstein condensate,
Physical Review A 91, 041603(R)/1-4 (2015).

Masaya Kunimi* and Hiroki Saito,
Upper bound of one-magnon excitation and lower bound of effective mass for ferromagnetic spinor Bose and Fermi gases,
Physical Review A 91, 043624/1-6 (2015).

Sunatda Arayachukeat, Jiraporn Seemork, Porntip Pan-In, Kittima Amornwachirabodee, Naunpun Sangphech, Titiporn Sansureerungsikul, Kamonluck Sathornsantikun, Chotima Vilaivan, Kazuki Shigyou, Prompong Pienpinijtham, Tirayut Vilaivan, Tanapat Palaga, Wijit Banlunara, Tsutomu Hamada, and *Supason Pattanaargson Wanichwecharungruang,
Bringing macromolecules into cells and evading endosomes by oxidized carbon nanoparticles,
Nano Letters 15(5), 3370-3376 (2015).

*Kenji Kashima, Toshiyuki Ogawa, Tatsunari Sakurai,
Selective pattern formation control: Spatial spectrum consensus and Turing instability approach,
Automatica 56, 25-35 (2015).

*Takafumi Iwaki, Tomomi Ishido, Ken Hirano, Alexei Lazutin, Valentina V. Vasilevskaya, Takahiro Kenmotsu and Kenichi Yoshikawa,
Marked difference in conformational fluctuation between giant DNA molecules in circular and linear forms,
Journal of Chemical Physics 142, 145101 (2015).

*Wataru Kurebayashi, Sho Shirasaka, and Hiroya Nakao,
A criterion for timescale decomposition of external inputs for generalized phase reduction of limit-cycle oscillators,
Nonlinear Theory and Its Applications (IEICE) 6, 171-180 (2015).

Takuya Yanagimachi, Mafumi HIshida, Yasuhisa Yamamura, and Kazuya Saito,
Ultraslow oscillation of nematic disclination after abrupt switching of DC voltage,
Journal of the Physical Society of Japan 84, 033601/1-4 (2015).

Alexandra S. Burk, Cornelia Monzel, Hiroshi Y. Yoshikawa, Patrick Wuchter, Rainer Saffrich, Volker Eckstein, *Motomu Tanaka and *Anthony D. Ho,
Quantifying Adhesion Mechanisms and Dynamics of Human Hematopoietic Stem and Progenitor Cells.,
Scientific Reports 5, 9370 (2015).

*Jean-Paul Rieu, Helene Delano-Ayari, Seiji Takagi, Yoshimi Tanaka, Toshiyuki Nakagaki,
Periodic traction in migrating large amoeba of Physarum Polycephalum,
Journal of Royal Society Interface 12, 20150099 (2015).

*Yuji Sasaki, Hikaru Hoshikawa, Takafumi Seto, Fumiaki Kobayashi, V. S. R. Jampani, Stephan Herminghaus, Christian Bahr, and Hiroshi Orihara,
Direct visualization of spatiotemporal structure of self-assembled colloidal particles in electrohydrodynamic flow of a nematic liquid crystal,
Langmuir 31, 3815-3819 (2015).

Youhei Kanatsu and *Masahide Sato,
Crystallization of Brownian particles in a pyramidal pit by a uniform external force,
Journal of the Physics Society of Japan 84, 044601/1-6 (2015).

*Yoshiyuki Kageyama, Tomonori Ikegami, Natsuko Hiramatsu, *Sadamu Takeda, and Tadashi Sugawara,
Structure and growth behavior of centimeter-sized helical oleate assemblies formed with assistance of medium-length carboxylic acids,
Soft Matter 11, 3550-3558 (2015).

Masahiro Mizuno, Taro Toyota, Miki Konishi, Yoshiyuki Kageyama, *Masumi Yamada, and Minoru Seki,
Formation of monodisperse hierarchical lipid particles utilizing microfluidic droplets in a non-equilibrium state,
Langmuir 31, 2334-2341 (2015).

*Kiyoshi Kanazawa, Tomohiko G. Sano, Takahiro Sagawa, and Hisao Hayakawa,
Minimal Model of Stochastic Athermal Systems: Origin of Non-Gaussian Noise,
Physical Review Letters 114, 090601/1-10 (2015).

*Yoji Kawamura, Hiroya Nakao,
Phase description of oscillatory convection with a spatially translational mode,
Physica D: Nonlinear Phenomena 295-296, 11–29 (2015).

*Satoshi Nakata, Shogo Suzuki, Takato Ezaki, Hiroyuki Kitahata, Kei Nishi, and Yasumasa Nishiura,
Response of a chemical wave to local pulse irradiation in the ruthenium-catalyzed Belousov–Zhabotinsky reaction,
Physical Chemistry Chemistry Physics 17, 9148-9152 (2015).

*Hiroyuki Ebata and Masaki Sano,
Swimming droplets driven by a surface wave,
Scientific Reports 5, 8546/1-7 (2015).

Elisa Zemma, Makoto Tsubota, and Javier Luzuriaga,
Possible Visualization of a Superfluid Vortex Loop Attached to an Oscillating Beam,
Journal of Low Temperature Physics 179, 310-319 (2015).

*Takaki Yamamoto, Masafumi Kuroda, and Masaki Sano,
Three-dimensional analysis of thermo-mechanically rotating cholesteric liquid crystal droplets under a temperature gradient,
EPL 109, 46001/1-6 (2015).

Shin Yamaguchi, Kei Saito, Miki Sutoh, Takayuki Nishizaka, Yoko Y Toyoshima, Junichiro Yajima,
Torque generation by axonemal outer-arm dynein,
Biophysical Journal 108, 872-879 (2015).

Kanta Tsumoto, Masafumi Arai, Naoki Nakatani, Shun N. Watanabe and *Kenichi Yoshikawa,
Does DNA Exert an Active Role in Generating Cell-Sized Spheres in an Aqueous Solution with a Crowding Binary Polymer?,
Life 5(1), 459-466 (2015).

PingGen Cai and Takaharu Okajima,
Precision of cell-to-cell variation in power-law rheology characterized by atomic force microscopy,
Japanese Journal of Applied Physics 54, 037001 (2015).

Koh M. Nakagawa and *Hiroshi Noguchi,
Morphological changes of amphiphilic molecular assemblies induced by chemical reactions,
Soft Matter 11, 1403-1411 (2015).

*Masayuki Hashisaka, Tomoaki Ota, Koji Muraki, and Toshimasa Fujisawa,
Shot-noise evidence of fractional quasiparticle creation in a local fractional quantum Hall state,
Physical Review Letters 114, 056802/1-5 (2015).

*Juan M. R. Parrondo, Jordan M. Horowitz, and Takahiro Sagawa,
Thermodynamics of information,
Nature Physics 11, 131-139 (2015).

Wataru Yamamoto, Kaito Sasaki, Rio Kita, Shin Yagihara, and *Naoki Shinyashiki,
Dielectric study on temperature-concentration superposition of liquid to glass in fructose-water mixtures,
Journal of Molecular Liquids 206, 39–46 (2015).

Jun Kurushima, Daisuke Nakane, Takayuki Nishizaka, and *Haruyoshi Tomita,
Bacteriocin protein BacL₁ of Enterococcus faecalis targets cell division loci and specifically recognizes L-Ala₂-crossbridged peptidoglycan,
Journal of Bacteriology 197, 286-295 (2015).

Alexei Borodin, Ivan Corwin, Leonid Petrov, and Tomohiro Sasamoto,
Spectral theory for the q-boson particle system,
Compositio Mathematica 151, 1-67 (2015).

Jun Kurushima, Daisuke Nakane, Takayuki Nishizaka, Haruyoshi Tomita,,
Bacteriocin protein BacL1 of Enterococcus faecalis targets cell division loci and specifically recognizes L-Ala2-cross-bridged peptidoglycan,
J Bacteriol 197, 286-295 (2015).

*Hironori Hoshino and Shin Nakamura,
Effective temperature of nonequilibrium dense matter in holography,
Physical Review D 91, 026009 /1-10 (2015).

Takahiro Umeki, Masahiko Ohata, *Hiizu Nakanishi, Masatoshi Ichikawa,
Dynamics of microdroplets over the surface of hot water,
Scientific Reports 5, 8046/1-6 (2015).

Andrew J. Dunleavy, Karoline Wiesner, Ryoichi Yamamoto, and *C. Patrick Royall,
Mutual information reveals multiple structural relaxation mechanisms in a model glassformer,
Nature Comm. 6, 6089/1-8 (2015).

Mari Takahashi, Priyank Mohan, Akiko Nakade, Koichi Higashimine, Derek Mott, Tsutomu Hamada, Kazuaki Matsumura, Tomohiko Taguchi, and *Shinya Maenosono,
Ag/FeCo/Ag Core/shell/shell Magnetic Nanoparticles with Plasmonic Imaging Capability,
Langmuir 31, 2228–2236 (2015).

Masashi Kawaguchi, Hitoshi Miura, Kazuhiro Kishi, Masahide Sato, and *Makio Uwaha,
Period of a comblike pattern controlled by atom supply and noise,
Physical Review E 91, 012409/1-9 (2015).

Jean Wolff, *Shigeyuki Komura, and David Andelman,
Budding of domains in mixed bilayer membranes,
Physical Review E 91, 012708/1-10 (2015).

*Naoto Shiraishi and Takahiro Sagawa,
Fluctuation theorem for partially masked nonequilibrium dynamics,
Physical Review E 91, 012130/1-7 (2015).

Shoichi Toyabe and Eiro Muneyuki,
Single molecule thermodynamics of ATP synthesis by F1-ATPase,
New Journal of Physics 17, 015008/1-7 (2015).

Shoichi Toyabe, *Eiro Muneyuki,
Single molecule thermodynamics of ATP synthesis by F1-ATPase,
New Journal of Physics 17, 015008 (2015).

Kingo Takiguchi, Makiko Egishi, Yohko Tanaka-Takiguchi, Masahito Hayashi and Kenichi Yoshikawa,
Specific Transformation of Assembly with Actin Filaments and Molecular Motors in a Cell-Sized Self-Emerged Liposome,
Origins of Life and Evolution of Biospheres 44(4), 325-329 (2015).

Anatoly A. Zinchenko and *Kenichi Yoshikawa,
Compaction of Double-Stranded DNA by Negatively Charged Proteins and Colloids,
Current Opinion in Colloid & Interface Science 20, 60-65 (2015).

*Tomonori Arakawa, Junichi Shiogai, Mariusz Ciorga, Martin Utz, Dieter Schuh, Makoto Kohda, Junsaku Nitta, Dominique Bougeard, Dieter Weiss, Teruo Ono, and Kensuke Kobayashi,
Shot noise induced by nonequilibrium spin accumulation,
Physical Review Letters 114, 016601/1-5 (2015).

*Hiroshi Noguchi, Ai Sakashita, and Masayuki Imai,
Shape transformations of toroidal vesicles,
Soft Matter 11, 193-201 (2015).

*Hiroshi Noguchi, Ai Sakashita and Masayuki Imai,
Shape transformations of toroidal vesicles,
Soft Matter 11, 193-201 (2015).

*Chwen-Yang Shew and Kenichi Yoshikawa,
A toy model for nucleus-sized crowding confinement,
Journal of Physics: Condensed Matter 27(6), 064118/1-7 (2015).

*Shio Inagaki, Hiroyuki Ebata and Kenichi Yoshikawa,
Steadily oscillating axial bands of binary granules in a nearly filled coaxial cylinder,
Physical Review E 91, 010201(R)/1-5 (2015).

Corrado Rainone, Pierfrancesco Urbani, Hajime Yoshino, *Francesco Zamponi,
Following the evolution of glassy states under external perturbations: compression and shear-strain,
Physical Review Letters 114, 015701/1-5 (2015).

Masato Itami and Shin-ichi Sasa,
Nonequilibrium Statistical Mechanics for Adiabatic Piston Problem,
Journal of Statistical Physics 158, 37-56 (2015).

---

2014

Tomohiro Sasamoto, and Lauren Williams,
Combinatorics of the asymmetric exclusion process on a semi-infinite lattice,
Journal of Combinatorics 5(4), 419-434 (2014).

Hideaki Matsubayashi, Yutetsu Kuruma, and Takuya Ueda,
Cell-Free Synthesis of SecYEG Translocon as the Fundamental Protein Transport Machinery,
Origins of Life and Evolution of Biospheres 44, 331-334 (2014).

*Yang Ho Na, Yuki Aburaya, Hiroshi Orihara, Kazuyuki Hiraoka, and Youngbae Han,
Electrically induced deformation in chiral smectic elastomers with different domain structures,
Physical Review E 90, 062507/1-6 (2014).

Ahmed Khorshid, Philip Zimny, David Tetreault-La Roche, Geremia Massarelli, *Takahiro Sakaue, and *Walter Reisner,
Dynamic Compression of Single Nanochannel Confined DNA via a Nanodozer Assay,
Physical Review Letters 113, 268104:1-5 (2014).

*Masaya Kunimi,
Metastable spin textures and Nambu-Goldstone modes of a ferromagnetic spin-1 Bose-Einstein condensate confined in a ring trap,
Physical Review A 90, 063632/1-8 (2014).

Ismael S. S. Carrasco, Kazumasa A. Takeuchi, Silvio da Costa Ferreira Junior, and *Tiago José Oliveira,
Interface fluctuations for deposition on enlarging flat substrates,
New Journal of Physics 16, 123057/1-20 (2014).

*Norio Kumada, Preden Roulleau, Benoit Roche, Masayuki Hashisaka, Hiroki Hibino, Ivana Petković, and Christian Glattli,
Resonant edge magnetoplasmons and their decay in graphene,
Physical Review Letters 113, 266601 (2014).

Saroj Kumar Nandi, *Giulio Biroli, Jean-Philippe Bouchaud, Kunimasa Miyazaki, and David R. Reichman,
Critical dynamical heterogeneities close to continuous second-order glass transitions,
Physical Review Letters 113, 245701/1-5 (2014).

Yuka Takeuchi, Yoko Sugawara, Tadashi Sugawara, and *Masakazu Iwasaka,
Magnetic rotation of monosodium urate and urinary tract stones for clinical treatment applications,
Magnetics, IEEE Transactions on 50, 6101204 (2014).

Yuri Mizukawa, Kentaro Suzuki, Shigefumi Yamamura, Yoko Sugawara, Tadashi Sugawara, and *Masakazu Iwasaka,
Magnetic manipulation of nucleic acid base microcrystals for DNA sensing,
Magnetics, IEEE Transactions on 50, 5001904 (2014).

Alexei Borodin, *Ivan Corwin, Tomohiro Sasamoto,
From duality to determinants for q-TASEP and ASEP,
Annals of Probability 42, 2314-2382 (2014).

Yuji Sasaki, Yoshinori Takikawa, V. S. R. Jampani, Hikaru Hoshikawa, Takafumi Seto, Christian Bahr, Stephan Herminghaus, Yoshiki Hidaka, and *Hiroshi Orihara,
Colloidal caterpillars for cargo transportation,
Soft Matter 10, 8813–8820 (2014).

Tomoya Kaneda and Hiroki Saito,
Dynamics of a vortex dipole across a magnetic phase boundary in a spinor Bose-Einstein condensate,
Physical Review A 90, 053632/1-7 (2014).

Nataliya Frenkel, Ali Makky, Ikhwan Resmala Sudji, *Michael Wink, and *Motomu Tanaka,
Mechanistic Investigation of Interactions between Steroidal Saponin Digitonin and Cell Membrane Models,
The Journal of Physical Chemistry B 118, 14632−14639 (2014).

*Hiroshi Noguchi,
Two- or three-step assembly of banana-shaped proteins coupled with shape transformation of lipid membranes,
EPL 108, 48001/1-6 (2014).

Akihiko Nakajima, Shuji Ishihara, Daisuke Imoto, and *Satoshi Sawai,
Rectified directional sensing in long-range cell migration,
Nature Communications 5, 5367/1-14 (2014).

Kousaku Maeda, Naoki Shinyashiki, Shin Yagihara, Simone Wiegand, *Rio Kita,
How does thermodiffusion of aqueous solutions depend on concentration and hydrophobicity?,
European Physical Journal E 37, 94（6pages） (2014).

Harden Rieger, Hiroshi Y. Yoshikawa, Katharina Quadt, Morten A. Nielsen, Cecilia P. Sanchez, Ali Salanti, *Motomu Tanaka and Michael Lanzer,
Cytoadhesion of Plasmodium falciparum–infected erythrocytes to chondroitin-4-sulfate is cooperative and shear enhanced,
Blood 125, 383-391 (2014).

*Miho Yanagisawa, Shinpei Nigorikawa, Takahiro Sakaue, Kei Fujiwara, and Masayuki Tokita,
Multiple patterns of polymer gels in microspheres due to the interplay among phase separation, wetting, and gelation,
Proc. Natl. Acad. Sci. USA 111, 15894-15899 (2014).

Shugo Yasuda and Ryoichi Yamamoto,
Synchronized molecular dynamics simulation via macroscopic heat and momentum transfer: an application to polymer lubrication,
Phys. Rev. X 4, 041011/1-10 (2014).

Adnan Hamid, John J. Molina, and Ryoichi Yamamoto,
Direct Numerical Simulations of Sedimenting Spherical Particles at Finite Reynolds Number,
RSC Advances 4, 53681-53693 (2014).

Takahiro Nemoto, Vivien Lecomte, Shin-ichi Sasa, and *Friédéric van Wijland,
Finite size effects in a mean-field kinetically constrained model: dynamical glassiness and quantum criticality,
Journal of Statistical Mechanics -, P10001/1-38 (2014).

Hiroshi Ueno, Yoshihiro Minagawa, Mayu Hara, Suhaila Rahman, Ichiro Yamato, Eiro Muneyuki, Hiroyuki Noji, Takeshi Murata, *Ryota Iino,
Torque Generation of Enterococcus hirae V-ATPase,
The Journal of Biology Chemistry 289, 31212-31223 (2014).

Mamoru Fujine, *Masahide Sato, Tetsuya Toyooka, Hiroyasu Katsuno, Yoshihisa Suzuki, and Tsutomu Sawada,
Crystallization of Brownian particles in thin systems constrained by walls,
Physical Review E 90, 032404/1-7 (2014).

Shugo Yasuda and Ryoichi Yamamoto,
Multiscale simulation for thermo-hydrodynamic lubrication of a polymeric liquid between parallel plates,
Molecular Simulation 41, 1002 (2014).

*Michikazu Kobayashi, and Muneto Nitta,
Nonrelativistic Nambu-Goldstone Modes Associated with Spontaneously Broken Space-Time and Internal Symmetries,
Physical Review Letters 113, 120403/1-5 (2014).

Jaka Fajar Fatriansyah, Yuji Sasaki, and *Hiroshi Orihara,
Nonequilibrium steady-state response of a nematic liquid crystal under simple shear flow and electric fields,
Physical Review E 90, 032504/1-8 (2014).

Hiroki Himeno, Naofumi Shimokawa, Shigeyuki Komura, David Andelman, *Tsutomu Hamada, and Masahiro Takagi,
Charge-induced phase separation in lipid membranes,
Soft Matter 10, 7959-7967 (2014).

Hiroki Himeno, Naofumi Shimokawa, Shigeyuki Komura, David Andelman, *Tsutomu Hamada, Masahiro Takagi,
Charge-induced phase separation in lipid membranes,
Soft Matter 10, 7959-7967 (2014).

Akira Furukawa, Davide Marenduzzo, and Michael E. Cates,
Activity-induced clustering in model dumbbell swimmers: The role of hydrodynamic interactions,
Physical Review E 90, 22303 (2014).

Yasuaki Komuro, Suyong Re, Chigusa Kobayashi, Eiro Muneyuki, and *Yuji Sugita,
CHARMM Force-Fields with Modified Polyphosphate Parameters Allow Stable Simulation of the ATP-Bound Structure of Ca²⁺-ATPase,
Journal of Chemical Theory and Computation 10, 4133−4142 (2014).

Hajime Yoshino and Francesco Zamponi,
The shear modulus of glasses: results from the full replica symmetry breaking solution,
Physical Review E 90, 022302/1-14 (2014).

*Shunsuke F. Shimobayashi and *Masatoshi Ichikawa,
Emergence of DNA-Encapsulating Liposomes from a DNA-Lipid Blend Film,
Journal of Physical Chemistry B 118, 10688-10694 (2014).

Mafumi Hishida, Yasuhisa Yamamura, and *Kazuya Saito,
Salt effects on lamellar repeat distance depending on head groups of neutrally charged lipids,
Langmuir 30, 10583-10589 (2014).

Phuc Nghia Nguyen, Mariam Veschgini, Motomu Tanaka, Gilles Waton, Thierry Vandammec and *Marie Pierre Krafft,
Counteracting the inhibitory effect of proteins towards lung surfactant substitutes: a fluorocarbon gas helps displace albumin at the air/water interfac,
Chemical Communications 50, 11576-11579 (2014).

*Naoko Nakagawa,
Universal expression for adiabatic pumping in terms of nonequilibrium steady states,
Physical Review E 90, 022108/1-6 (2014).

Koyomi Nakazawa, Mafumi Hishida, Shigenori Nagatomo, Yasuhisa Yamamura, and *Kazuya Saito,
Interplay between phase transition of DPPC bilayer and photoisomerization of doped stilbene molecule,
Chemistry Letters 43, 1352-1354 (2014).

Fumi Takabatake, Kenichi Yoshikawa, and *Masatoshi Ichikawa,
Communication: Mode bifurcation of droplet motion under stationary laser irradiation,
The Journal of Chemical Physics 141, 051103/1-4 (2014).

Ken-ichi Mizuochi, Hiizu Nakanishi, and *Takahiro Sakaue,
Dynamical scaling of polymerized membranes,
Europhysics Letters 107, 38003:p1 -p6 (2014).

Mihoko Kajita, Kaoru Sugimura, Atsuko Ohoka, Jemima Burden, Hitomi Suganuma, Masaya Ikegawa, Takashi Shimada, Tetsuya Kitamura, Masanobu Shindoh, Susumu Ishikawa, Sayaka Yamamoto, Sayaka Saitoh, Yuta Yako, Ryosuke Takahashi, Takaharu Okajima, Junichi Kikuta, Yumiko Maijima, Masaru Ishii, Masazumi Tada, and *Yasuyuki Fujita,
Filamin acts as a key regulator in epithelial defence against transformed cells,
Nature Communications 5, 4428/1-13 (2014).

*Tatsuaki Tsuruyama,
A model of cell biological signaling predicts the phase transition of signaling and provides mathematical formula of signaling,
PLOS ONE 9, e102911 (2014).

*Kazuya Fujimoto, Makoto Tsubota,
Spin-superflow turbulence in spin-1 ferromagnetic spinor Bose-Einstien condensates,
Physical Review A 90, 013629/1-7 (2014).

*Takahiro Tanaka, Tomonori Arakawa, Masahiro Maeda, Kensuke Kobayashi, Yoshitaka Nishihara, Teruo Ono, Takayuki Nozaki, Akio Fukushima, and Shinji Yuasa,
Leak current estimated from the shot noise in magnetic tunneling junctions,
Applied Physics Letters 105, 042405/1-4 (2014).

*Yujiro Eto, Mark Sadgrove, Sho Hasegawa, Hiroki Saito, and Takuya Hirano,
Control of spin current in a Bose gas by periodic application of π pulses,
Physical Review A 90, 013626/1-6 (2014).

Shunchi Kawasaki, *Takahiro Muraoka, Haruki Obara, Takerou Ishii, Tsutomu Hamada, *Kazushi kinbara,
Thermodriven Micrometer-Scale Aqueous-Phase Separation of Amphiphilic Oligoethylene Glycol Analogues,
Chemistry-An Asian Journal 9, 2778-2788 (2014).

Suman G. Das, Abhishek Dhar, Keiji Saito, Christian B. Mendl, Herbert Spohn,
Numerical test of hydrodynamic fluctuation theory in the Fermi-Pasta-Ulam chain,
Physical Review E 90, 12124/1-11 (2014).

*Kiyoshi Kanazawa, Takahiro Sagawa, and Hisao Hayakawa,
Energy pumping in electrical circuits under avalanche noise,
Physical Review E 90, 012115/1-8 (2014).

Tsuyoshi Kadokura, Jun Yoshida, and Hiroki Saito,
Hysteresis in quantized vortex shedding,
Physical Review A 90, 013612/1-5 (2014).

*Shuji Fujii, Shigeyuki Komura, and Chun-Yi David Lu,
Structural rheology of the smectic phase,
Materials 7, 5146-5168 (2014).

Hideaki Matsubayashi, Yutetsu Kuruma, and Takuya Ueda,
In vitro synthesis of the E. coli Sec Translocon from DNA,
Angewandte Chemie International Edition 53, 7535-7538 (2014).

Masakazu Yamagishi, Narii Watase, Masayuki Hashisaka, Koji Muraki, and *Toshimasa Fujisawa,
Spin-dependent tunneling rates for electrostatically defined GaAs quantum dot,
Physical Review B 90, 035306 (2014).

*Yoshiki Hidaka and Noriko Oikawa,
Chaos and Spatiotemporal Chaos in Convective Systems,
FORMA 29, 29-32 (2014).

Yoshiaki Kinosita, Daisuke Nakane, Mitsuhiro Sugawa, Tomoko Masaike, Kana Mizutani, Makoto Miyata, and *Takayuki Nishizaka,
Unitary step of gliding machinery in Mycoplasma mobile,
Proceedings of the National Academy of Sciences 111, 8601-8606 (2014).

*Michikazu Kobayashi, and Muneto Nitta,
Nonrelativistic Nambu-Goldstone modes propagating along a Skyrmion line,
Physical Review D 90, 025010/1-9 (2014).

Adnan Hamid, John J. Molina, and Ryoichi Yamamoto,
Simulation studies of microstructure of colloids in sedimentation,
Molecular Simulation 41, 968 (2014).

*Wataru Kurebayashi, Tsubasa Ishii, Mikio Hasegawa, and Hiroya Nakao,
Design and control of noise-induced synchronization patterns,
EPL (Europhysics Letters) 107, 10009/1-6 (2014).

*Jordan M. Horowitz and Takahiro Sagawa,
Equivalent Definitions of the Quantum Nonadiabatic Entropy Production,
Journal of Statistical Physics 156, 55-65 (2014).

*Shigeyuki Komura and David Andelman,
Physical aspects of heterogeneities in multi-component lipid membranes,
Advances in Colloid and Interface Science 208, 34-46 (2014).

Chunyu Shih and Ryoichi Yamamoto,
Dynamic electrophoresis of charged colloids in an oscillating electric field,
Physical Review E 89, 062317-1-11 (2014).

*Kensaku Chida, Tokuro Hata, Tomonori Arakawa, Sadashige Matsuo, Yoshitaka Nishihara, Takahiro Tanaka, Teruo Ono, and Kensuke Kobayashi,
Avalanche electron bunching in a Corbino disk in the quantum Hall effect breakdown regime,
Physical Review B 89, 235318/1-4 (2014).

Tomohiro Yanao and *Kenichi Yoshikawa,
Chiral symmetry breaking of a double-stranded helical chain through bend-writhe coupling,
Physical Review E 89, 062713/1-16 (2014).

*Norio Kumada, Romain Dubourget, Ken’ichi Sasaki, Shinichi Tanabe, Hiroki Hibino, Hiroshi Kamata, Masayuki Hashisaka, Koji Muraki, Toshimasa Fujisawa,
Plasmon transport and its guiding in graphene,
New Journal of Physics 16, 063055 (2014).

*Satoshi Nakata, Tomoaki Ueda, Tatsuya Miyaji, Yui Matsuda, Yukiteru Katsumoto, Hiroyuki Kitahata, Takafumi Shimoaka, and Takeshi Hasegawa,
Transient reciprocating motion of a self-propelled object controlled by a molecular layer of a N‑stearoyl‑p‑nitroaniline: dependence on the temperature of an aqueous phase,
Journal of Physical Chemistry C 118, 14888-14893 (2014).

*Nobuhiko J. Suematsu, Tomohiro Sasaki, Satoshi Nakata, and Hiroyuki Kitahata,
Quantitative estimation of the parameters for self-motion driven by difference in surface tension,
Langmuir 30, 8101-8108 (2014).

Masahiro Takahashi, Takeshi Mizushima, and Kazushige Machida,
FFLO Multi-Phase Transition in Two-Band Superconductor,
JPS Conference Proceedings 3, 015022 (2014).

*Jonne V. Koski, Ville F. Maisi, Takahiro Sagawa, and Jukka P. Pekola,
Experimental Observation of the Role of Mutual Information in the Nonequilibrium Dynamics of a Maxwell Demon,
Physical Review Letters 113, 030601/1-5 (2014).

Yutaka Sumino and *Kenichi Yoshikawa,
Amoeba-like motion of an oil droplet Chemical model of self-motile organisms,
The European Physical Journal Special Topics 223, 1345–1352 (2014).

＊Itsuki Kunita, Shigeru Kuroda, Kaito Ooki, Toshiyuki Nakagaki,
Attempts to retreat from a dead-ended long capillary by backward swimming in Paramecium,
Frontiers in Microbiology 5, Article 270 (1-8) (2014).

*Nen Saito, Shuji Ishihara, and Kunihiko Kaneko,
Evolution of Genetic Redundancy : The Relevance of Complexity in Genotype-Phenotype Mapping,
New Journal of Physics 16, 063013/1-14 (2014).

Tatsuya Shima, Takahiro Muraoka, Tsutomu Hamada, Masamune Morita, Masahiro Takagi, Hajime Fukuoka, Yuichi Inoue, Takashi Sagawa, Akihiko Ishijima, Yuki Omata, Takashi Yamashita, *Kazushi Kinbara,
Micrometer-Size Vesicle Formation Triggered by UV Light,
Langmuir 30, 7289-7295 (2014).

*Kyogo Kawaguchi, Shin-ichi Sasa, and Takahiro Sagawa,
Nonequilibrium dissipation-free transport in F1-ATPase and the thermodynamic role of asymmetric allosterism,
Biophysical Journal 106, 2450-2457 (2014).

*Kyogo Kawaguchi, Shin-ichi Sasa, and Takahiro Sagawa,
Nonequilibrium Dissipation-free Transport in F1-ATPase and the Thermodynamic Role of Asymmetric Allosterism,
Biophysical Journal 106, 2450–2457 (2014).

*Hiroki Saito,
Comment on “Ground-state fragmentation phase transition for attractive bosons in anisotropic traps”,
Physical Review A 89, 067601/1-2 (2014).

Kentaro Takahashi and Yasuyuki Kimura,
Dynamics of colloidal particles in electrohydrodynamic convection of nematic liquid crystal,
Physical Review E 90, 012502/1-5 (2014).

*Hiroki Ohta and Shin-ichi Sasa,
Jamming transition in kinetically constrained models with the parity symmetry,
Journal of Statistical Physics 155, 827-842 (2014).

*Shuji Fujii, Shigeyuki Komura, and C.-Y. David Lu,
Structural rheology of focal conic domains: a stress-quench experiment,
Soft Matter 10, 5289-5295 (2014).

Ai Nakatsuji, *Makoto Tsubota, and Hideo Yano,
Statistics of vortex loops emitted from quantum turbulence driven by an oscillating sphere,
Physical Review B 89, 174520/1-7 (2014).

Xiaowei He, Naoki Fujimura, J. Meagan Lloyd, Kristopher J. Erickson, A. Alec Talin, Qi Zhang, Weilu Gao, Qijia Jiang, Yukio Kawano, Robert H. Hauge, *François Léonard and *Junichiro Kono,
Carbon Nanotube Terahertz Detector,
Nano Letters 14, 3953–3958 (2014).

Masamune Morita, *Tsutomu Hamada, Mun’delanji C. Vestergaard, Masahiro Takagi,
Endo- and Exocytic Budding Transformation of Slow-Diffusing Membrane Domains Induced by Alzheimer’s Amyloid Beta,
Physical Chemistry Chemical Physics 16, 8773-8777 (2014).

*Hiroya Nakao, Tatsuo Yanagita, Yoji Kawamura,
Phase-Reduction Approach to Synchronization of Spatiotemporal Rhythms in Reaction-Diffusion Systems,
Physical Review X 4, 021032/1-23 (2014).

*Masayuki Hashisaka, Tomoaki Ota, Masakazu Yamagishi, Toshimasa Fujisawa and Koji Muraki,
Cross-correlation measurement of quantum shot noise using homemade transimpedance amplifiers,
Review of Scientific Instruments 85, 054704 (2014).

Masa Tsuchiya, Midori Hashimoto, Yoshiko Takenaka, Ikuko N. Motoike and *Kenichi Yoshikawa,
Global Genetic Response in a Cancer Cell: Self-Organized Coherent Expression Dynamics,
PLOS ONE 9(8), e105491 (2014).

Nataliya Frenkel, Jens Wallys, Sara Lippert, Jörg Teubert, Stefan Kaufmann, Aparna Das, Eva Monroy, Martin Eickhoff and *Motomu Tanaka,
High Precision, Electrochemical Detection of Reversible Binding of Recombinant Proteins on Wide Bandgap GaN Electrodes Functionalized with Biomembrane Models,
Advanced Functional Materials 24, 4927–4934 (2014).

*Yujiro Eto, Hiroki Saito, and Takuya Hirano,
Observation of dipole-induced spin texture in an ⁸⁷Rb spin-2 Bose-Einstein condensate,
Physical Review Letters 112, 185301/1-5 (2014).

Sayuri Tanaka, Yuma Oki, and Yasuyuki Kimura*,
Melting process of a single finite-sized two-dimensional colloidal crystal,
Physical Review E 89, 052305/1-9 (2014).

Masato Itami and Shin-ichi Sasa,
Macroscopically measurable force induced by temperature discontinuities at solid-gas interfaces,
Physical Review E 89, 052106/1-6 (2014).

Michikazu Kobayashi, and *Eiji Nakano, and Muneto Nitta,
Color Magnetism in Non-Abelian Vortex Matter,
Journal of High Energy Physics 6, 130/1-12 (2014).

David A. Head, Emi Ikebe, Akiko Nakamasu, Peijuan Zhang, Lara Gay Villaruz, Suguru Kinoshita, Shoji Ando, and *Daisuke Mizuno,
High-frequency affine mechanics and nonaffine relaxation in a model cytoskeleton,
Physical Review E 89, 042711/1-5 (2014).

*Mafumi Hishida, Koichiro Tanaka, Yasuhisa Yamamura, and Kazuya Saito,
Cooperativity between water and lipids in lamellar to inverted-hexagonal phase transition,
Journal of the Physical Society of Japan 83, 044801 (2014).

*Kenji Tanabe, Ryo Matsumoto, Jun-ichiro Ohe, Shuichi Murakami, Takahiro Moriyama, Daichi Chiba, Kensuke Kobayashi, and Teruo Ono,
Real-time observation of Snell’s law for spin waves in a thin ferromagnetic film,
Applied Physics Express 7, 053001/1-4 (2014).

Julian Stark, Kay Brandner, Keiji Saito, and Udo Seifert,
A Classical Nernst Engine,
Physical Review Letters 112, 140601/1-5 (2014).

Ai Sakashita, Masayuki Imai, and *Hiroshi Noguchi,
Morphological variation of lipid vesicle confined in spherical vesicle,
Physical Review E 89, 040701(R)/1-4 (2014).

Masahiro Kazama, *Wataru Kurebayashi, Takahiro Tsuchida, Yuta Minoshima, Mikio Hasegawa, Koji Kimura, and Hiroya Nakao,
Enhancement of noise correlation for noise-induced synchronization of limit-cycle oscillators by threshold filtering,
NOLTA, IEICE 5, 157-171 (2014).

Ai Sakashita, Masayuki Imai, and *Hiroshi Noguchi,
Morphological variation of a lipid vesicle confined in a spherical vesicle,
Physical Review E 89, 040701/1-4 (2014).

*Takahiro Sagawa,
Thermodynamic and Logical Reversibilities Revisited,
Journal of Statistical Mechanics, 1-33 (2014).

*Tomoyuki Mochida, Yusuke Funasako, Kousuke Takazawa, Masashi Takahashi, Michio M. Matsushita, and Tadashi Sugawara,
Chemical control of the monovalent-divalent electron-transfer phase transition in biferrocenium-TCNQ salts,
Chemical Communications 50, 5473-5475 (2014).

*Shin-ichi Sasa,
Derivation of hydrodynamics from the Hamiltonian description of particle systems,
Physical Review Letters 112, 100602 (2014).

*Takahiro Nemoto, and Shin-ichi Sasa,
Computation of large deviation statistics via iterative measurement-and-feedback procedure,
Physical Review Letters 112, 090602/1-5 (2014).

*Masahito Ueda and Shin-ichi Sasa,
Calculation of 1RSB transition temperature of spin glass models on regular random graphs under the replica symmetric ansatz,
Journal of Statistical Mechanics: Theory and Experiment P02005/1-21 (2014).

Satoshi Aya, Yuji Sasaki, Damian Pociecha, Fumito Araoka, Ewa Gorecka, Kenji Ema, Igor Musevic, Hiroshi Orihara, Ken Ishikawa, and *Hideo Takezoe,
Stepwise heat-capacity change at an orientation transition in liquid crystals,
Physical Review E 89, 022512 (2014).

*Kazuhiko Seki, Saurabh Mogre, and Shigeyuki Komura,
Diffusion coefficients in leaflets of bilayer membranes,
Physical Review E 89, 022713/1-12 (2014).

*Masahiro Takahashi, Takeshi Mizushima, and Kazushige Machida,
Multi-band effects on Fulde-Ferrell-Larkin-Ovchinnikov states of Pauli-limited superconductors,
Physical Review B 89, 064505/1-16 (2014).

*Hiroki Saito,
Many-body dynamics of a Bose-Einstein condensate collapsing by quantum tunneling,
Physical Review A 89, 023610/1-6 (2014).

*Yoshihiro Shimizu, Yutetsu Kuruma, Takashi Kanamori, Takuya Ueda ,
The PURE system for protein production,
Methods in Molecular Biology 1118, 275-284 (2014).

Keita Iida, Hiroyuki Kitahata, and *Masaharu Nagayama,
Theoretical study on the translation and rotation of an elliptic camphor particle,
Physica D 272, 39-50 (2014).

Masahiro Takahashi, Takeshi Mizushima, and Kazushige Machida,
Fulde-Ferrell-Larkin-Ovchinnikov States in Two-Band Superconductors,
Journal of the Physical Society of Japan 83, 023703/1-5 (2014).

*Anatoly A. Zinchenko, Kanta Tsumoto, Shizuaki Murata and Kenichi Yoshikawa,
Crowding by Anionic Nanoparticles Causes DNA Double-Strand Instability and Compaction,
The Journal of Physical Chemistry B 118, 1256-1262 (2014).

*Shin-ichi Sasa,
Possible extended forms of thermodynamic entropy,
Journal of Statistical Mechanics: Theory and Experiment , P01004/1-16 (2014).

*Kazumasa A. Takeuchi,
Experimental approaches to universal out-of-equilibrium scaling laws: turbulent liquid crystal and other developments,
Journal of Statistical Mechanics: Theory and Experiment P01006/1-28 (2014).

*Chwen-Yang Shew, Kenta Kondo and Kenichi Yoshikawa,
Rigidity of a spherical capsule switches the localization of encapsulated particles between inner and peripheral regions under crowding condition: Simple model on cellular architecture,
The Journal of Chemical Physics 140, 024907/1-9 (2014).

Rastko Joksimovic, Shun N. Watanabe, Sven Riemer, Michael Gradzielski and *Kenichi Yoshikawa,
Self-organized patterning through thedynamic segregation of DNA and silicananoparticles,
Scientific Reports 4, 3660/1-7 (2014).

Takeshi Kuroiwa and *Kunimasa Miyazaki,
Brownian motion with multiplicative noises revisited,
Journal of Physics A: Mathematical and Theoretical 47, 012001/1-8 (2014).

Johannes-Geert Hagmann, Naoko Nakagawa, and *Michel Peyrard,
Characterization of the low-temperature properties of a simplified protein model,
Physical Review E 89, 012705/1-13 (2014).

*Hirokazu Tanimoto and Masaki Sano,
A simple force-motion relation for migrating cells revealed by multipole analysis of traction stress,
Biophysical Journal 106, 16-25 (2014).

*Katsuto Takakura, Takahiko Yamamoto, Kensuke Kurihara, Taro Toytota, Kiyoshi Ohnuma, and *Tadashi Sugawara,
Spontaneous Transformation from Micelles to Vesicles Associated with Sequential Conversionsof Comprising Amphiphiles within Assemblies,
Chemical Communications 50, 2190-2192 (2014).

---

2013

Fumihiko Kono, Tetsuya Honda, Aini Wulamujiang, Hironori Haga, *Tatsuaki Tsuruyama,
IFN-γ/CCR5 expression in invariant NKT cells and CCL5 expression in capillary veins of dermal papillae correlate with development of psoriasis vulgaris,
British Journal of Dermatology 170, 1048-1055 (2013).

Yu Kakimoto, Shinji Ito, Hitoshi Abiru, Hirokazu Kotani, Munetaka Ozeki, Keiji Tamaki, Tatsuaki Tsuruyama*,
Sorbin and SH3 domain-containing protein 2 is released from infarcted heart in the very early phase: proteomic analysis of cardiac tissues from patients,
Journal of American Heart Association 2, e000565 (2013).

*Takahiro Sagawa and Masahito Ueda,
Role of mutual information in entropy production under information exchanges,
New Journal of Physics 15, 125012/1-23 (2013).

Yoshinori Takikawa and *Hiroshi Orihara,
Persistence of Brownian motion in shear flow,
Physical Review E 88, 062111/1-5 (2013).

*Jung Jun Park, Kang-Hwan Kim, Takahiro Sagawa, and Sang Wook Kim,
Heat Engine Driven by Purely Quantum Information,
Physical Review Letters 111, 230402/1-5 (2013).

Kuniyoshi Izaki and *Yasuyuki Kimura,
Hydrodynamic effects in the measurement of interparticle forces in nematic colloids,
Physical Review E 88, 54501 (2013).

*Keiji Saito and Takeo Kato,
Kondo signature in heat transfer via a local two-state system,
Physical Review Letters 111, 214301/1-4 (2013).

*Hayato Shiba and Takeshi Kawasaki,
Spatiotemporal heterogeneity of local free volumes in highly supercooled liquid,
The Journal of Chemical Physics 139, 184502/1-8 (2013).

*Hiroyuki Ebata and Masaki Sano,
Bifurcation from stable holes to replicating holes in vibrated dense suspensions,
Physical Review E 88, 053007/1-8 (2013).

*Yuka Sakuma, Takashi Taniguchi, Toshihiro Kawakatsu, and Masayuki Imai,
Tubular membrane formation of binary giant unilamellar vesicles composed of cylinder and inverse-cone-shaped lipids,
Biophysical Journal 105, 2074-2081 (2013).

*Patrik L. Ferrari, Tomohiro Sasamoto, Herbert Spohn,
Coupled Kardar-Parisi-Zhang Equations in One Dimension,
Journal of Statistical Physics 153, 377-399 (2013).

*Tatsuro Yuge, Takahiro Sagawa, Ayumu Sugita, and Hisao Hayakawa,
Geometrical Excess Entropy Production in Nonequilibrium Quantum Systems,
Journal of Statistical Physics 153, 412-441 (2013).

Sosuke Ito and Takahiro Sagawa,
Information Thermodynamics on Causal Networks,
Physical Review Letters 111, 180603/1-6 (2013).

*Sang Wook Kim, Kang-Hwan Kim, Takahiro Sagawa, Simone De Liberato, and Masahito Ueda,
Kim et al. Reply:,
Physical Review Letters 111, 188902/1 (2013).

Masaru Suzuki, Hiroshi Sueto, Yusaku Hosokawa, Naoyuki Muramoto, Takayuki Narumi, Yoshiki Hidaka, and Shoichi Kai,
Duality of diffusion dynamics in particle motion in soft-mode turbulence,
Physical Review E 88, 42147 (2013).

*Sadashige Matsuo, Kensaku Chida, Daichi Chiba, Teruo Ono, Keith Slevin, Kensuke Kobayashi, Tomi Ohtsuki, Cui-Zu Chang, Ke He, Xu-Cun Ma, and Qi-Kun Xue,
Experimental Proof of Universal Conductance Fluctuation in Quasi-1D Epitaxial Bi₂Se₃ Wires,
Physical Review B 88, 155438/1-8 (2013).

*Hiroaki Ito, Toru Yamanaka, Shou Kato, Tsutomu Hamada, Masahiro Takagi, *Masatoshi Ichikawa, *Kenichi Yoshikawa,
Dynamical formation of lipid bilayer vesicles fromlipid-coated droplets across a planar monolayer at an oil/water interface,
Soft Matter 9, 9539–9547 (2013).

*Tomonori Arakawa, Yoshitaka Nishihara, Masahiro Maeda, Shota Norimoto, and Kensuke Kobayashi,
Cryogenic amplifier for shot noise measurement at 20 mK,
Applied Physics Letters 103, 172104/1-4 (2013).

Tomo Kurimura, *Masatoshi Ichikawa, Masahiro Takinoue, *Kenichi Yoshikawa,
Back-and-forth micromotion of aqueous droplets in a dc electric field,
Physical Review E 88, 042918/1-5 (2013).

Ryo Tanaka, Tomonori Nomoto, Taro Toyota, Hiroyuki Kitahata, and *Masanori Fujinami,
Delayed response of interfacial tension in propagating chemical waves of the Belousov-Zhabotinsky reaction without stirring,
The Journal of Physical Chemistry B 117, 13893–13898 (2013).

*Yasutaka Iwashita and Yasuyuki Kimura,
Stable cluster phase of Janus particles in two dimensions,
Soft Matter 9, 10694-10698 (2013).

Takashi Imamura, *Tomohiro Sasamoto, Herbert Spohn,
On the equal time two-point distribution of the one-dimensional KPZ equation by replica,
Journal of Physics A: Mathematical and Theoretical 46, 355002/1-9 (2013).

*Yujiro Eto, Hayato Ikeda, Hirosuke Suzuki, Sho Hasegawa, Yasushi Tomiyama, Sawako Sekine, Mark Sadgrove, and Takuya Hirano,
Spin-echo-based magnetometry with spinor Bose-Einstein condensates,
Physical Review A 88, 031602(R)/1-4 (2013).

*David A. Head and Daisuke Mizuno,
Local mechanical response in semiflexible polymer networks subjected to an axisymmetric prestress,
Physical Review E 88, 022717/1-10 (2013).

*Jonne V. Koski, Takahiro Sagawa, O-P. Saira, Y. Yoon, A. Kutvonen, P. Solinas, M. Möttönen, T. Ala-Nissila, and Jukka P. Pekola,
Distribution of entropy production in a single-electron box,
Nature Physics 9, 644-648 (2013).

Jaka Fajar Fatriansyah and *Hiroshi Orihara,
Dynamical properties of nematic liquid crystals subjected to shear flow and magnetic fields: Tumbling instability and non-equilibrium fluctuations,
Physival Review E 88, 012510/1-9 (2013).

*Ryuichi Okamoto, Youhei Fujitani, and Shigeyuki Komura,
Drag coefficient of a rigid spherical particle in a near-critical binary fluid mixture,
Journal of the Physical Society of Japan 82, 084003/1-10 (2013).

*Kang Kim, Shinji Saito, Kunimasa Miyazaki, Giulio Biroli, and *David R. Reichman,
Dynamic Length Scales in Glass-Forming Liquids: An Inhomogeneous Molecular Dynamics Simulation Approach,
The Journal of Physical Chemistry B 117, 13259–13267 (2013).

*Jordan M. Horowitz, Takahiro Sagawa, and Juan M. R. Parrondo,
Imitating Chemical Motors with Optimal Information Motors,
Physical Review Letters 111, 010602/1-5 (2013).

*Yoshiyuki Kageyama, Naruho Tanigake, Yuta Kurokome, Sachiko Iwaki, *Sadamu Takeda, Kentaro Suzuki, and *Tadashi Sugawara,
Macroscopic motion of supramolecular assemblies actuated by photoisomerization of azobenzene derivatives,
Chemical Communications 49, 9386-9388 (2013).

*Kiyoshi Kanazawa, Takahiro Sagawa, and Hisao Hayakawa,
Heat conduction induced by non-Gaussian athermal fluctuations,
Physical Review E 87, 052124/1-10 (2013).

*Masakazu Iwasaka, Yuito Miyashita, Yuri Mizukawa, Kentaro Suzuki, Taro Toyota, and Tadashi Sugawara,
Biaxial Alignment Control of Guanine Crystals by Diamagnetic Orientation,
Applied Physics Express 6, 037002/1-4 (2013).